View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5767-Insertion-2 (Length: 586)

Name: NF5767-Insertion-2
Description: NF5767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5767-Insertion-2
NF5767-Insertion-2
[»] chr8 (4 HSPs)
chr8 (53-586)||(27184991-27185527)
chr8 (8-55)||(27184899-27184946)
chr8 (70-147)||(27186470-27186542)
chr8 (384-439)||(4555607-4555662)
[»] chr7 (1 HSPs)
chr7 (379-571)||(5104600-5104795)
[»] chr4 (2 HSPs)
chr4 (137-246)||(31674738-31674847)
chr4 (53-129)||(31674913-31674989)
[»] chr6 (2 HSPs)
chr6 (379-572)||(29974082-29974279)
chr6 (379-426)||(3244597-3244644)
[»] chr2 (2 HSPs)
chr2 (496-556)||(21647522-21647582)
chr2 (379-420)||(21647395-21647436)
[»] chr5 (1 HSPs)
chr5 (379-423)||(4222331-4222375)
[»] chr1 (1 HSPs)
chr1 (379-423)||(6901999-6902043)


Alignment Details
Target: chr8 (Bit Score: 410; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 53 - 586
Target Start/End: Original strand, 27184991 - 27185527
Alignment:
Q  53 ttgtaagctagttcatatagacaacaactacatgcagaattgtagaaatgctgagccacacccaaccaaggtcttgaagagttctgttgattttgtagaa 152  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||  ||||| |||||||||||||||||||||||||||||||||||||    
T  27184991 ttgtaagctagttcatatagaaaacaactacatgcagaattgtagaaatgct-ag--acaccaaaccaaggtcttgaagagttctgttgattttgtagaa 27185087  T
Q  153 atgtcaagcaacatgttaaaagagtggttgattagatatgagtttagacaccatttggtttttatatcaaagctgaatatgattgttagtaatttggtat 252  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27185088 atgtcaagcaatatgttaaaagagtggttgattagatatgagtctagacaccatttggtttttatatcaaagctgaatatgattgttagtaatttggtat 27185187  T
Q  253 ggtatctgttggataaagttgtattctgtaaggatgttgtaataaatagaatagagatgaagaagttgattgtgcaagatgacacaacacgtgttgatac 352  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  27185188 ggtatctgttggataaagttgtattctgtaaggatgttgtgataaatagaatagagatgaagaagttgattgtgcaagattacacaatacgtgttgatac 27185287  T
Q  353 tagtttcagg------nnnnnnnnnnnnnnnngaaacggcaaatattattcacgtcgagtgtatgcaagacgcacaacaactcgcggataaaataaacgg 446  Q
    ||||||||||                      ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27185288 tagtttcaggttttttttttttttttttttttgaaacggcaaatattattcacgtcgagtgtatgcaagacgcacaacaactcgcagataaaataaacgg 27185387  T
Q  447 taaacatacaaaggtgccgcacatacacagaacacccaaacccaaggcttcaaacagtgaggctgaagtatacttgcatggggcaagcgtacccctacct 546  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||    
T  27185388 taaacatacaaaggtgccgcacatacacagaacacccaaacccaaggcttcaaacagtgaggctgaagtatacttgcatggggcaagcatacccctgcct 27185487  T
Q  547 cactcccgaaagacccaaagagcacctgcccgagcaacaa 586  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  27185488 cactcccgaaagacccaaagagcacctgcccgagcaacaa 27185527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 27184899 - 27184946
Alignment:
Q  8 ctttggctcttccaattgaagaatgaggaatactataatctgctattg 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27184899 ctttggctcttccaattgaagaatgaggaatactataatctgctattg 27184946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 147
Target Start/End: Original strand, 27186470 - 27186542
Alignment:
Q  70 tagacaacaactacatgcagaattgtagaaatgctgagccacacccaaccaaggtcttgaagagttctgttgattttg 147  Q
    ||||||||| ||||||||||||||||||||||| ||||||||     |||||| |||||| |||||||||||||||||    
T  27186470 tagacaacagctacatgcagaattgtagaaatgatgagccact----accaagttcttga-gagttctgttgattttg 27186542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 439
Target Start/End: Original strand, 4555607 - 4555662
Alignment:
Q  384 ggcaaatattattcacgtcgagtgtatgcaagacgcacaacaactcgcggataaaa 439  Q
    ||||||| ||||||  |||||||||||||||  ||||||| |||||||||||||||    
T  4555607 ggcaaattttattctagtcgagtgtatgcaaagcgcacaaaaactcgcggataaaa 4555662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 379 - 571
Target Start/End: Complemental strand, 5104795 - 5104600
Alignment:
Q  379 gaaacggcaaatattattcacgtcgagtgtatgcaagacgcacaacaa-ctcgcggataaaataaacggtaaacatacaaagg-tgccgcacatacacag 476  Q
    |||||||||||||||||||||||| || | |||||||  ||||||||| |||||||||| || |||| | | ||||||||||| |||||||||||||| |    
T  5104795 gaaacggcaaatattattcacgtcaagggaatgcaaggtgcacaacaaactcgcggatagaaaaaacagaagacatacaaagggtgccgcacatacacgg 5104696  T
Q  477 aacaccca-aacccaaggcttcaaacagtgaggctgaagtatacttgcatggggcaagcgtacccctacctcactcccgaaagacccaaagagcac 571  Q
    |||||||  |||||||||  |||||||||||||| ||  |||||||| |  |||| ||| ||||||| |||||| ||||||| |||||| ||||||    
T  5104695 aacaccctgaacccaaggtatcaaacagtgaggccgagatatacttgtaaagggcgagcatacccctgcctcacccccgaaaaacccaaggagcac 5104600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 137 - 246
Target Start/End: Complemental strand, 31674847 - 31674738
Alignment:
Q  137 tgttgattttgtagaaatgtcaagcaacatgttaaaagagtggttgatt-agatatgagtttagacaccatttggtttttatatcaaagctgaatatgat 235  Q
    |||||||||||||| |||||||||||| || ||||| |||||||||||| |||||||||| |||||||  |||| ||||| |||||||| ||||| ||||    
T  31674847 tgttgattttgtagtaatgtcaagcaaaatattaaa-gagtggttgatttagatatgagtctagacactgtttgttttttgtatcaaagttgaatgtgat 31674749  T
Q  236 tgttagtaatt 246  Q
    |||||||||||    
T  31674748 tgttagtaatt 31674738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 53 - 129
Target Start/End: Complemental strand, 31674989 - 31674913
Alignment:
Q  53 ttgtaagctagttcatatagacaacaactacatgcagaattgtagaaatgctgagccacacccaaccaaggtcttga 129  Q
    |||||| |||||  ||||||||| |||||||||||||||||||||||||| |||||||||||  |||||||||||||    
T  31674989 ttgtaacctagtgtatatagacagcaactacatgcagaattgtagaaatgttgagccacaccataccaaggtcttga 31674913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 379 - 572
Target Start/End: Complemental strand, 29974279 - 29974082
Alignment:
Q  379 gaaacggcaaatattattcacgtcgagtgtatgcaagacgcacaaca-actcgcggata-aaataaacggtaaacatacaaa-ggtgccgcacatacaca 475  Q
    ||||||| ||||||||||||||||||| | |||||||  |||||||| ||| ||||||| ||| |||| | | ||||||||| ||||||||||||||||     
T  29974279 gaaacggtaaatattattcacgtcgagcgaatgcaaggtgcacaacatacttgcggatagaaaaaaacagaagacatacaaagggtgccgcacatacacg 29974180  T
Q  476 gaaca-cccaaacccaaggcttcaaacagtgaggctgaagtatacttgcatggggcaagcgtacccctacctcactcccgaaagacccaaagagcacc 572  Q
    ||||| ||  |||||||||  |||||||||||||  ||  |||||||| |  |||| ||| ||||||| |||||| | |||||  ||||| |||||||    
T  29974179 gaacatcctgaacccaaggtatcaaacagtgaggtcgagatatacttgtaaagggcgagcatacccctgcctcaccctcgaaaaccccaaggagcacc 29974082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 426
Target Start/End: Original strand, 3244597 - 3244644
Alignment:
Q  379 gaaacggcaaatattattcacgtcgagtgtatgcaagacgcacaacaa 426  Q
    |||||||| |||||||||||| ||||| ||||||||| ||||||||||    
T  3244597 gaaacggctaatattattcacatcgagagtatgcaaggcgcacaacaa 3244644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 496 - 556
Target Start/End: Original strand, 21647522 - 21647582
Alignment:
Q  496 tcaaacagtgaggctgaagtatacttgcatggggcaagcgtacccctacctcactcccgaa 556  Q
    ||||||| |||||||||| |||||||||||| | ||||| |||| || |||||||||||||    
T  21647522 tcaaacaatgaggctgaaatatacttgcatgagtcaagcataccactgcctcactcccgaa 21647582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 420
Target Start/End: Original strand, 21647395 - 21647436
Alignment:
Q  379 gaaacggcaaatattattcacgtcgagtgtatgcaagacgca 420  Q
    |||| ||||||||||||||||||||||  |||||||||||||    
T  21647395 gaaatggcaaatattattcacgtcgagaatatgcaagacgca 21647436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 423
Target Start/End: Original strand, 4222331 - 4222375
Alignment:
Q  379 gaaacggcaaatattattcacgtcgagtgtatgcaagacgcacaa 423  Q
    |||| |||||||||||||| |||||||  ||||||||||||||||    
T  4222331 gaaaaggcaaatattattctcgtcgagattatgcaagacgcacaa 4222375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 423
Target Start/End: Complemental strand, 6902043 - 6901999
Alignment:
Q  379 gaaacggcaaatattattcacgtcgagtgtatgcaagacgcacaa 423  Q
    |||| |||||| ||||||| |||||||| ||||||||||||||||    
T  6902043 gaaatggcaaacattattctcgtcgagtatatgcaagacgcacaa 6901999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University