View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5767-Insertion-3 (Length: 539)

Name: NF5767-Insertion-3
Description: NF5767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5767-Insertion-3
NF5767-Insertion-3
[»] chr5 (3 HSPs)
chr5 (8-539)||(7130590-7131112)
chr5 (168-257)||(7141104-7141193)
chr5 (170-257)||(7152937-7153024)


Alignment Details
Target: chr5 (Bit Score: 422; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 8 - 539
Target Start/End: Original strand, 7130590 - 7131112
Alignment:
Q  8 ccttcaatgaaatctataatacaagtgctaactggcacaaaatccaaagtggagaaaatgcacaaaaaagctgataaaatattggaaataattgttagaa 107  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  7130590 ccttcaatgaaatctataatacaaatgctaactggcacaaaatccaaagtgttgaaaatgcacaaaaaagctgataaaatattggaaataattgttagaa 7130689  T
Q  108 agcatcaagagaagcaaagaagagcaaaagtagggaaaattagtagtgatgaggtagagcaggaagatcttgttgatgtgcttttgagaatccaagaaag 207  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7130690 agcatcaagagaagcaaagaagagcaaaagaagggaaagttagtagtgatgaggtagagcaagaagatcttgttgatgtgcttttgagaatccaagaaag 7130789  T
Q  208 tggaagccttgaaatcccaataacaactagcaacatcaaagctgtgatttttgtaagtatattaaatatcgttgttgggattaattttacttttcttann 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  7130790 tggaagccttgaaatcccaataacaactagcaacatcaaagctgtgatttttgtaagtatattaaatatcgttgttgggattaattttacttttcttatt 7130889  T
Q  308 nnnnngggtgaccatgccattaattttactagctataggggtacatannnnnnnctttctatatttgtgtgaagttccttcnnnnnnntgtgcgaagtta 407  Q
         ||||||||||||||||||||||||||||||||||||||||||         || ||||||||||||||||||||||       ||||||||||||    
T  7130890 tttttgggtgaccatgccattaattttactagctataggggtacata---------ttttatatttgtgtgaagttccttcaaaaaaatgtgcgaagtta 7130980  T
Q  408 tcaagttttcaatcattaatttttctactcaaagaatattttcaacgttgcgataatgatattttcatccactttaaaatagtcaacctcacaagttgta 507  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7130981 tcaagttttcaatcattaatttttttactcaaagaatattttcaacgttgcgataatgatattttcatccactttaaaatagtcaacctcacaagttgta 7131080  T
Q  508 attacaaaaattatgctgaagattgtttcccc 539  Q
    ||||||||||||| ||||||||||||||||||    
T  7131081 attacaaaaattaggctgaagattgtttcccc 7131112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 257
Target Start/End: Original strand, 7141104 - 7141193
Alignment:
Q  168 aggaagatcttgttgatgtgcttttgagaatccaagaaagtggaagccttgaaatcccaataacaactagcaacatcaaagctgtgattt 257  Q
    ||||||||||||| ||||| ||||||||| ||||| ||||||| ||||||||  ||| | | ||||  | ||||||||||||||||||||    
T  7141104 aggaagatcttgtggatgttcttttgagagtccaacaaagtggtagccttgatgtccaattgacaatcaacaacatcaaagctgtgattt 7141193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 257
Target Start/End: Original strand, 7152937 - 7153024
Alignment:
Q  170 gaagatcttgttgatgtgcttttgagaatccaagaaagtggaagccttgaaatcccaataacaactagcaacatcaaagctgtgattt 257  Q
    ||||||||| | ||||| |||||| || ||||| ||||||  | |||||| |||  ||||||||| | ||||||||||||||||||||    
T  7152937 gaagatcttctagatgttcttttgcgagtccaacaaagtgataaccttgatatcaaaataacaaccaacaacatcaaagctgtgattt 7153024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University