View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5767-Insertion-7 (Length: 90)

Name: NF5767-Insertion-7
Description: NF5767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5767-Insertion-7
NF5767-Insertion-7
[»] chr1 (15 HSPs)
chr1 (8-88)||(2073961-2074041)
chr1 (8-90)||(2069615-2069697)
chr1 (49-88)||(19528364-19528403)
chr1 (48-90)||(8177217-8177259)
chr1 (49-87)||(11068881-11068919)
chr1 (49-90)||(16170013-16170054)
chr1 (49-82)||(38978985-38979018)
chr1 (49-90)||(42983409-42983450)
chr1 (48-89)||(51814493-51814534)
chr1 (50-90)||(44126396-44126436)
chr1 (49-85)||(52116821-52116857)
chr1 (49-88)||(19480527-19480566)
chr1 (52-83)||(35187922-35187953)
chr1 (48-83)||(35699951-35699986)
chr1 (49-88)||(47753714-47753753)
[»] chr7 (12 HSPs)
chr7 (47-90)||(35119381-35119424)
chr7 (49-85)||(23301642-23301678)
chr7 (49-88)||(4161288-4161327)
chr7 (49-90)||(7801180-7801221)
chr7 (49-86)||(15137553-15137590)
chr7 (49-90)||(22760863-22760904)
chr7 (48-85)||(41487361-41487398)
chr7 (48-89)||(45709744-45709785)
chr7 (49-90)||(48771938-48771979)
chr7 (49-85)||(25956332-25956368)
chr7 (49-85)||(43590907-43590943)
chr7 (47-82)||(30579333-30579368)
[»] chr6 (10 HSPs)
chr6 (49-90)||(24641225-24641266)
chr6 (51-90)||(32613175-32613214)
chr6 (56-90)||(6776642-6776676)
chr6 (48-90)||(12234542-12234584)
chr6 (56-85)||(34444810-34444839)
chr6 (49-85)||(21418470-21418506)
chr6 (49-85)||(28028530-28028566)
chr6 (56-88)||(33931982-33932014)
chr6 (47-90)||(12188338-12188381)
chr6 (49-88)||(32201922-32201961)
[»] chr5 (6 HSPs)
chr5 (49-90)||(14495840-14495881)
chr5 (47-90)||(29692421-29692464)
chr5 (49-90)||(21589288-21589329)
chr5 (49-85)||(892514-892550)
chr5 (49-84)||(5390891-5390926)
chr5 (49-80)||(20118618-20118649)
[»] chr3 (11 HSPs)
chr3 (49-90)||(16991542-16991583)
chr3 (48-90)||(10499144-10499186)
chr3 (53-90)||(2667866-2667903)
chr3 (53-90)||(4844546-4844583)
chr3 (53-90)||(4870242-4870279)
chr3 (48-89)||(5499443-5499484)
chr3 (49-87)||(203090-203128)
chr3 (48-90)||(8051213-8051255)
chr3 (48-90)||(31520640-31520682)
chr3 (53-85)||(17554454-17554486)
chr3 (49-88)||(42430335-42430373)
[»] chr8 (4 HSPs)
chr8 (49-85)||(32157191-32157227)
chr8 (49-90)||(20994493-20994534)
chr8 (49-86)||(23361688-23361725)
chr8 (45-85)||(22268973-22269013)
[»] chr4 (10 HSPs)
chr4 (48-90)||(51250557-51250599)
chr4 (49-90)||(9241060-9241101)
chr4 (49-89)||(47044717-47044757)
chr4 (47-90)||(27965545-27965588)
chr4 (49-90)||(28635696-28635737)
chr4 (49-90)||(55427235-55427276)
chr4 (49-85)||(13496241-13496277)
chr4 (49-77)||(19229255-19229283)
chr4 (49-85)||(19238617-19238653)
chr4 (49-88)||(51948480-51948519)
[»] scaffold0187 (2 HSPs)
scaffold0187 (49-82)||(12465-12498)
scaffold0187 (49-82)||(22793-22826)
[»] chr2 (6 HSPs)
chr2 (46-85)||(29197416-29197455)
chr2 (47-85)||(37480073-37480111)
chr2 (48-90)||(39714991-39715033)
chr2 (48-77)||(25931005-25931034)
chr2 (48-89)||(34041624-34041665)
chr2 (49-85)||(32106566-32106602)
[»] scaffold0070 (1 HSPs)
scaffold0070 (49-90)||(42555-42596)
[»] scaffold0417 (1 HSPs)
scaffold0417 (46-90)||(10216-10260)


Alignment Details
Target: chr1 (Bit Score: 77; Significance: 2e-36; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-36
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 2073961 - 2074041
Alignment:
Q  8 atctgtaactgcaaatgtgtctttaacactttcaaccaccaaacccatttgggttggcctggtggtattgacttgggatct 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2073961 atctgtaactgcaaatgtgtctttaacactttcaaccaccaaacccatttgggttggcctggttgtattgacttgggatct 2074041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 9e-33
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 2069615 - 2069697
Alignment:
Q  8 atctgtaactgcaaatgtgtctttaacactttcaaccaccaaacccatttgggttggcctggtggtattgacttgggatctgg 90  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  2069615 atctgtaattgcaaatgtgtctttaacactttcaaccaccacacccatttgggttggcctggttgtattgacttgggatctgg 2069697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 88
Target Start/End: Complemental strand, 19528403 - 19528364
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttgggatct 88  Q
    |||||| |||||||||||||||||||||| ||||||||||    
T  19528403 aacccacttgggttggcctggtggtattggcttgggatct 19528364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 8177259 - 8177217
Alignment:
Q  48 aaacccatttgggttggcctggtggtattgacttgggatctgg 90  Q
    ||||||||||| |||||||| ||||||||| ||||||||||||    
T  8177259 aaacccatttgagttggcctagtggtattggcttgggatctgg 8177217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 11068919 - 11068881
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttgggatc 87  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  11068919 aacccatttgggttgatctggtggtattgacttgggatc 11068881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 16170054 - 16170013
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttgggatctgg 90  Q
    |||||| ||||||| |||||||||||||||||||||| ||||    
T  16170054 aacccacttgggttagcctggtggtattgacttgggacctgg 16170013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 38979018 - 38978985
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttg 82  Q
    ||||||||||||||||||| ||||||||||||||    
T  38979018 aacccatttgggttggcctagtggtattgacttg 38978985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 42983450 - 42983409
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttgggatctgg 90  Q
    |||| |||||||||||| |||||||||||||||| |||||||    
T  42983450 aacctatttgggttggcatggtggtattgacttgagatctgg 42983409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 51814493 - 51814534
Alignment:
Q  48 aaacccatttgggttggcctggtggtattgacttgggatctg 89  Q
    ||||||| ||||||||||||| ||||||||||||| ||||||    
T  51814493 aaacccacttgggttggcctgatggtattgacttgagatctg 51814534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 90
Target Start/End: Original strand, 44126396 - 44126436
Alignment:
Q  50 acccatttgggttggcctggtggtattgacttgggatctgg 90  Q
    ||||| |||||||||||||||||||||||| ||||| ||||    
T  44126396 acccacttgggttggcctggtggtattgacctgggacctgg 44126436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 52116857 - 52116821
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttggga 85  Q
    |||||| |||||||||||||||||||||| |||||||    
T  52116857 aacccagttgggttggcctggtggtattggcttggga 52116821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 88
Target Start/End: Original strand, 19480527 - 19480566
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttgggatct 88  Q
    |||||||||||||||||||  |||| ||||||||||||||    
T  19480527 aacccatttgggttggccttatggtgttgacttgggatct 19480566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 83
Target Start/End: Original strand, 35187922 - 35187953
Alignment:
Q  52 ccatttgggttggcctggtggtattgacttgg 83  Q
    |||||||||||||||| |||||||||||||||    
T  35187922 ccatttgggttggcctagtggtattgacttgg 35187953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 83
Target Start/End: Original strand, 35699951 - 35699986
Alignment:
Q  48 aaacccatttgggttggcctggtggtattgacttgg 83  Q
    |||| ||||||||||||||| |||||||||||||||    
T  35699951 aaactcatttgggttggcctagtggtattgacttgg 35699986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 88
Target Start/End: Original strand, 47753714 - 47753753
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttgggatct 88  Q
    ||||||||| ||||| |||||| |||||||||||||||||    
T  47753714 aacccatttaggttgacctggtcgtattgacttgggatct 47753753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 90
Target Start/End: Original strand, 35119381 - 35119424
Alignment:
Q  47 caaacccatttgggttggcctggtggtattgacttgggatctgg 90  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  35119381 caaacccatttgggttggcctagtggtattgacttgggatctgg 35119424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 23301678 - 23301642
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttggga 85  Q
    |||||| ||||||||||||||||||||||||||||||    
T  23301678 aacccacttgggttggcctggtggtattgacttggga 23301642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 88
Target Start/End: Original strand, 4161288 - 4161327
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttgggatct 88  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  4161288 aacccatttgggttggtctggtggtattggcttgggatct 4161327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 7801180 - 7801221
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttgggatctgg 90  Q
    |||||| |||| ||||||||||||||||||||||||| ||||    
T  7801180 aacccacttggtttggcctggtggtattgacttgggacctgg 7801221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 15137553 - 15137590
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttgggat 86  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  15137553 aacccacttgggttggcctggtggtactgacttgggat 15137590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 22760863 - 22760904
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttgggatctgg 90  Q
    |||||| ||||||||| |||||||||||||||||||| ||||    
T  22760863 aacccacttgggttggtctggtggtattgacttgggacctgg 22760904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 41487361 - 41487398
Alignment:
Q  48 aaacccatttgggttggcctggtggtattgacttggga 85  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  41487361 aaacccacttgggttggcctggtggtattggcttggga 41487398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 45709785 - 45709744
Alignment:
Q  48 aaacccatttgggttggcctggtggtattgacttgggatctg 89  Q
    |||||||||||||||||||| ||||||||  |||||||||||    
T  45709785 aaacccatttgggttggcctagtggtattagcttgggatctg 45709744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 48771938 - 48771979
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttgggatctgg 90  Q
    |||||| |||||||||| ||||||||||| ||||||||||||    
T  48771938 aacccacttgggttggcttggtggtattggcttgggatctgg 48771979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 25956368 - 25956332
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttggga 85  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  25956368 aacccatttgggttggcctagtggtattggcttggga 25956332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 43590907 - 43590943
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttggga 85  Q
    |||||| |||||||||||||||||||||| |||||||    
T  43590907 aacccagttgggttggcctggtggtattggcttggga 43590943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 30579333 - 30579368
Alignment:
Q  47 caaacccatttgggttggcctggtggtattgacttg 82  Q
    |||||||| |||||||||||||||||||||| ||||    
T  30579333 caaacccacttgggttggcctggtggtattggcttg 30579368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.0000000000004; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 24641266 - 24641225
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttgggatctgg 90  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  24641266 aacccatttgggttggcttggtggtattgacttgggatctgg 24641225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 90
Target Start/End: Complemental strand, 32613214 - 32613175
Alignment:
Q  51 cccatttgggttggcctggtggtattgacttgggatctgg 90  Q
    |||| ||||||||||||||||||||||||||||| |||||    
T  32613214 cccacttgggttggcctggtggtattgacttggggtctgg 32613175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 90
Target Start/End: Complemental strand, 6776676 - 6776642
Alignment:
Q  56 ttgggttggcctggtggtattgacttgggatctgg 90  Q
    |||||||||||||||||||||| ||||||||||||    
T  6776676 ttgggttggcctggtggtattggcttgggatctgg 6776642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 12234584 - 12234542
Alignment:
Q  48 aaacccatttgggttggcctggtggtattgacttgggatctgg 90  Q
    ||||||| || ||||||||||||||||||||||||||| ||||    
T  12234584 aaacccacttaggttggcctggtggtattgacttgggacctgg 12234542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 85
Target Start/End: Original strand, 34444810 - 34444839
Alignment:
Q  56 ttgggttggcctggtggtattgacttggga 85  Q
    ||||||||||||||||||||||||||||||    
T  34444810 ttgggttggcctggtggtattgacttggga 34444839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 21418470 - 21418506
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttggga 85  Q
    |||||| |||||||||||||||||||||| |||||||    
T  21418470 aacccagttgggttggcctggtggtattggcttggga 21418506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 28028530 - 28028566
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttggga 85  Q
    |||||| |||||||||||||||||| |||||||||||    
T  28028530 aacccacttgggttggcctggtggtgttgacttggga 28028566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 33932014 - 33931982
Alignment:
Q  56 ttgggttggcctggtggtattgacttgggatct 88  Q
    |||||||| ||||||||||||||||||||||||    
T  33932014 ttgggttgacctggtggtattgacttgggatct 33931982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 12188381 - 12188338
Alignment:
Q  47 caaacccatttgggttggcctggtggtattgacttgggatctgg 90  Q
    |||||||| |||||||||||| ||||||||| ||||||| ||||    
T  12188381 caaacccacttgggttggcctagtggtattggcttgggacctgg 12188338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 88
Target Start/End: Complemental strand, 32201961 - 32201922
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttgggatct 88  Q
    ||||||||||||||| | ||||||||||| ||||||||||    
T  32201961 aacccatttgggttgacttggtggtattggcttgggatct 32201922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.0000000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 14495881 - 14495840
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttgggatctgg 90  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  14495881 aacccatttgggttggtctggtggtattgacttgggatctgg 14495840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 29692464 - 29692421
Alignment:
Q  47 caaacccatttgggttggcctggtggtattgacttgggatctgg 90  Q
    |||||||||||||||||| ||||||||||||  |||||||||||    
T  29692464 caaacccatttgggttggtctggtggtattggattgggatctgg 29692421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 21589288 - 21589329
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttgggatctgg 90  Q
    |||||| |||||||||||||||||||||| ||||||| ||||    
T  21589288 aacccacttgggttggcctggtggtattggcttgggacctgg 21589329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 892550 - 892514
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttggga 85  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  892550 aacccatttgggttggcctagtggtattggcttggga 892514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 84
Target Start/End: Complemental strand, 5390926 - 5390891
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttggg 84  Q
    ||||||||||||||||||| ||||||||| ||||||    
T  5390926 aacccatttgggttggcctagtggtattggcttggg 5390891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 80
Target Start/End: Complemental strand, 20118649 - 20118618
Alignment:
Q  49 aacccatttgggttggcctggtggtattgact 80  Q
    |||||||||||||||| |||||||||||||||    
T  20118649 aacccatttgggttggtctggtggtattgact 20118618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.0000000000004; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 16991542 - 16991583
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttgggatctgg 90  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  16991542 aacccatttgggttggcctggtggtattggcttgggatctgg 16991583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 10499186 - 10499144
Alignment:
Q  48 aaacccatttgggttggcctggtggtattgacttgggatctgg 90  Q
    ||||||| |||||||||||||||||||||| ||||||||||||    
T  10499186 aaacccacttgggttggcctggtggtattggcttgggatctgg 10499144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 2667866 - 2667903
Alignment:
Q  53 catttgggttggcctggtggtattgacttgggatctgg 90  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  2667866 catttgggttggcctggtggtattggcttgggatctgg 2667903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 4844583 - 4844546
Alignment:
Q  53 catttgggttggcctggtggtattgacttgggatctgg 90  Q
    |||||||||||| |||||||||||||||||||||||||    
T  4844583 catttgggttggtctggtggtattgacttgggatctgg 4844546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 4870279 - 4870242
Alignment:
Q  53 catttgggttggcctggtggtattgacttgggatctgg 90  Q
    |||||||||||| |||||||||||||||||||||||||    
T  4870279 catttgggttggtctggtggtattgacttgggatctgg 4870242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 5499484 - 5499443
Alignment:
Q  48 aaacccatttgggttggcctggtggtattgacttgggatctg 89  Q
    ||||||| ||||||||||||||||||||||||||| ||||||    
T  5499484 aaacccacttgggttggcctggtggtattgacttgagatctg 5499443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 203090 - 203128
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttgggatc 87  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  203090 aacccacttgggttggcctagtggtattgacttgggatc 203128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 8051213 - 8051255
Alignment:
Q  48 aaacccatttgggttggcctggtggtattgacttgggatctgg 90  Q
    ||||||| |||||||||||||||||||||| ||||||| ||||    
T  8051213 aaacccacttgggttggcctggtggtattggcttgggacctgg 8051255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 31520682 - 31520640
Alignment:
Q  48 aaacccatttgggttggcctggtggtattgacttgggatctgg 90  Q
    ||||||| ||||||||||||||||| |||| ||||||||||||    
T  31520682 aaacccacttgggttggcctggtggcattggcttgggatctgg 31520640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 17554454 - 17554486
Alignment:
Q  53 catttgggttggcctggtggtattgacttggga 85  Q
    ||||||||||||||||||| |||||||||||||    
T  17554454 catttgggttggcctggtgatattgacttggga 17554486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 88
Target Start/End: Original strand, 42430335 - 42430373
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttgggatct 88  Q
    |||||| |||||||||| ||||||||||||||||||||||    
T  42430335 aacccacttgggttggc-tggtggtattgacttgggatct 42430373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 32157191 - 32157227
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttggga 85  Q
    |||||||||||||||||||||||||||||||||||||    
T  32157191 aacccatttgggttggcctggtggtattgacttggga 32157227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 20994534 - 20994493
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttgggatctgg 90  Q
    |||||| |||||||||||| ||||||||||||||||| ||||    
T  20994534 aacccacttgggttggcctagtggtattgacttgggacctgg 20994493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 23361725 - 23361688
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttgggat 86  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  23361725 aacccacttgggttgacctggtggtattgacttgggat 23361688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 22269013 - 22268973
Alignment:
Q  45 accaaacccatttgggttggcctggtggtattgacttggga 85  Q
    |||||||||| |||||||||||||||||| ||| |||||||    
T  22269013 accaaacccacttgggttggcctggtggtgttggcttggga 22268973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 51250599 - 51250557
Alignment:
Q  48 aaacccatttgggttggcctggtggtattgacttgggatctgg 90  Q
    ||||||| |||||||||||||||||||||| ||||||||||||    
T  51250599 aaacccacttgggttggcctggtggtattggcttgggatctgg 51250557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 9241101 - 9241060
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttgggatctgg 90  Q
    |||||| |||||||||||||||||||||| ||||||||||||    
T  9241101 aacccacttgggttggcctggtggtattggcttgggatctgg 9241060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 47044717 - 47044757
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttgggatctg 89  Q
    |||||| |||| |||||||||||||||||||||||||||||    
T  47044717 aacccacttggattggcctggtggtattgacttgggatctg 47044757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 27965588 - 27965545
Alignment:
Q  47 caaacccatttgggttggcctggtggtattgacttgggatctgg 90  Q
    |||||||| |||||||||||| ||||||||| ||||||||||||    
T  27965588 caaacccacttgggttggcctagtggtattggcttgggatctgg 27965545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 28635696 - 28635737
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttgggatctgg 90  Q
    |||||| |||||||| |||||||||| |||||||||||||||    
T  28635696 aacccacttgggttgtcctggtggtactgacttgggatctgg 28635737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 55427276 - 55427235
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttgggatctgg 90  Q
    |||||| |||||||||||||||||||||| ||||||| ||||    
T  55427276 aacccacttgggttggcctggtggtattggcttgggacctgg 55427235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 13496241 - 13496277
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttggga 85  Q
    |||||| |||||||||| |||||||||||||||||||    
T  13496241 aacccacttgggttggcatggtggtattgacttggga 13496277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 77
Target Start/End: Complemental strand, 19229283 - 19229255
Alignment:
Q  49 aacccatttgggttggcctggtggtattg 77  Q
    |||||||||||||||||||||||||||||    
T  19229283 aacccatttgggttggcctggtggtattg 19229255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 19238653 - 19238617
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttggga 85  Q
    |||||| |||||||||||||||||||||| |||||||    
T  19238653 aacccacttgggttggcctggtggtattggcttggga 19238617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 88
Target Start/End: Original strand, 51948480 - 51948519
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttgggatct 88  Q
    |||||| |||||||| |||||| |||||||||||||||||    
T  51948480 aacccacttgggttgtcctggtagtattgacttgggatct 51948519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 34; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 12498 - 12465
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttg 82  Q
    ||||||||||||||||||||||||||||||||||    
T  12498 aacccatttgggttggcctggtggtattgacttg 12465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 22826 - 22793
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttg 82  Q
    ||||||||||||||||||||||||||||||||||    
T  22826 aacccatttgggttggcctggtggtattgacttg 22793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 85
Target Start/End: Complemental strand, 29197455 - 29197416
Alignment:
Q  46 ccaaacccatttgggttggcctggtggtattgacttggga 85  Q
    ||||||||| |||||||||| |||||||||||||||||||    
T  29197455 ccaaacccacttgggttggcttggtggtattgacttggga 29197416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 37480073 - 37480111
Alignment:
Q  47 caaacccatttgggttggcctggtggtattgacttggga 85  Q
    |||||||| |||||||||||||||||||||| |||||||    
T  37480073 caaacccacttgggttggcctggtggtattggcttggga 37480111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 39714991 - 39715033
Alignment:
Q  48 aaacccatttgggttggcctggtggtattgacttgggatctgg 90  Q
    ||||||| |||||||||| ||||||||||||||||||| ||||    
T  39714991 aaacccacttgggttggcatggtggtattgacttgggacctgg 39715033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 77
Target Start/End: Original strand, 25931005 - 25931034
Alignment:
Q  48 aaacccatttgggttggcctggtggtattg 77  Q
    ||||||||||||||||||||||||||||||    
T  25931005 aaacccatttgggttggcctggtggtattg 25931034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 34041665 - 34041624
Alignment:
Q  48 aaacccatttgggttggcctggtggtattgacttgggatctg 89  Q
    ||||||| |||||||||||| ||||||||||||| |||||||    
T  34041665 aaacccacttgggttggcctagtggtattgacttaggatctg 34041624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 32106566 - 32106602
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttggga 85  Q
    |||||| |||||||||||||||||| |||||||||||    
T  32106566 aacccacttgggttggcctggtggtgttgacttggga 32106602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 30; Significance: 0.00000003; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 42596 - 42555
Alignment:
Q  49 aacccatttgggttggcctggtggtattgacttgggatctgg 90  Q
    |||||| |||||||||||| ||||||||||||||| ||||||    
T  42596 aacccagttgggttggcctagtggtattgacttggaatctgg 42555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 29; Significance: 0.0000001; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 10216 - 10260
Alignment:
Q  46 ccaaacccatttgggttggcctggtggtattgacttgggatctgg 90  Q
    ||||||||| ||||||||||||| || ||||| ||||||||||||    
T  10216 ccaaacccacttgggttggcctgatgatattggcttgggatctgg 10260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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