View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5767-Insertion-9 (Length: 51)

Name: NF5767-Insertion-9
Description: NF5767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5767-Insertion-9
NF5767-Insertion-9
[»] chr4 (1 HSPs)
chr4 (7-42)||(31875323-31875358)


Alignment Details
Target: chr4 (Bit Score: 36; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 31875323 - 31875358
Alignment:
7 agaactactactccataataatatgtcaaaatcctc 42  Q
    ||||||||||||||||||||||||||||||||||||    
31875323 agaactactactccataataatatgtcaaaatcctc 31875358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University