View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5767_high_14 (Length: 238)
Name: NF5767_high_14
Description: NF5767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5767_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 52600624 - 52600407
Alignment:
| Q |
1 |
aggttatcattgtcaggtcaaaattgtgtatcaaagtaagtatcattagatttagtacctatattatacctgatagacagggccaaatccaccacttcca |
100 |
Q |
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| T |
52600624 |
aggttctcattgtcaggtcaaaattgtgtatcaaagtaagtatcattagatttagtacctatattatacctgatagacagggccaaatccaccacttcca |
52600525 |
T |
|
| Q |
101 |
agaagatatctgcggtggaaattcttggtggcttttctcaatgtctggaaatcaaagtagctaattgtcctaagattcccactaatgaactccatgaatc |
200 |
Q |
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| T |
52600524 |
agaagatatctgcggtggaaattcttggtggcttttctcaatgtctggaaatcaaagtagctaattgtcctaagattcccactaatgaactccatgaatc |
52600425 |
T |
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| Q |
201 |
ctgttatacatatagaaa |
218 |
Q |
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|||||||||||||||||| |
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| T |
52600424 |
ctgttatacatatagaaa |
52600407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 195
Target Start/End: Original strand, 16912588 - 16912717
Alignment:
| Q |
66 |
atacctgatagacagggccaaatccaccacttccaagaagatatctgcggtggaaattcttggtggcttttctcaatgtctggaaatcaaagtagctaat |
165 |
Q |
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|||||| ||| ||||| ||||||||||||||||||||||||| || | ||| || ||||| || || ||||| |||||| |||||||||||||||| |
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| T |
16912588 |
ataccttatatacaggtccaaatccaccacttccaagaagatttccatgaaagaagttattggttgccttcctcaacgtctggtaatcaaagtagctaat |
16912687 |
T |
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| Q |
166 |
tgtcctaagattcccactaatgaactccat |
195 |
Q |
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| T |
16912688 |
agaccgaaggctcccactaaagaactccat |
16912717 |
T |
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