View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5767_high_2 (Length: 544)
Name: NF5767_high_2
Description: NF5767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5767_high_2 |
 | |
|
| [»] chr4 (12 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 13 - 544
Target Start/End: Original strand, 35278183 - 35278719
Alignment:
| Q |
13 |
atcatcaagttacaaa-ggaaggactaatgcagaagagtgagtagaaggggatatgaaaagaaagagactcacnnnnnnngcatcccataattttactgt |
111 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||| ||||||| ||| |
|
|
| T |
35278183 |
atcatcaagttacaaaaggaaggactaatgcagcagagtgagtagaatggggtatgaaaagaaagagactcaccgttttagcatcccagaattttattgt |
35278282 |
T |
|
| Q |
112 |
tttatcagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatggtagatgaatgtgactctgaagtagtaacagaactaaaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| || || |
|
|
| T |
35278283 |
tttatcagcagaagatgttgcaaatatagtggatcctggttgaaatctaacatctaagatggtagatgaatgtgactctgaggcagtaacagaagtagaa |
35278382 |
T |
|
| Q |
212 |
gtatccatgtagcaaatgaaaggctgtataaaccacaatataaagataaatac----attatgcagacaataaaaagattgaattggaatatttctcgca |
307 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||| |||| ||||| |
|
|
| T |
35278383 |
gtatccatgttgcaaatgaaaggctgtataaaccacaatataaagataaatatgttaattatgcagaccataaaaagatggaattggaaaatttatcgca |
35278482 |
T |
|
| Q |
308 |
ttgattattcacctttccgctgttcccaccacttgctacaatctttccatctgatgaaaaatcgcaggacgaaagtgtctcaccgctttgaaaaccttgt |
407 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
35278483 |
ttgattattcaccttcccgctgttcccaccgcttgctacaatctttccatctgatgaaaaatcgcaggacgaaagtgtctgaccgcttggaaaaccttgt |
35278582 |
T |
|
| Q |
408 |
gtaagaaataaaaataaagattgaatcaactaaatttccttaattgtcatctcaaattcactagatactaacaagaactttgtgaagtatatgaaatgac |
507 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
35278583 |
gtaagaaataaaaataaacagtgaatcaactaaatttccttatttgtcatctcaaattcactagatactaacaaaaaaattgtgaagtatatgaaatgac |
35278682 |
T |
|
| Q |
508 |
agaattgggatgccagagatgtatagaatagaaattt |
544 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
35278683 |
agaattgtgatgccaaagatgtatagaatagaaattt |
35278719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 17 - 544
Target Start/End: Original strand, 35241397 - 35241941
Alignment:
| Q |
17 |
tcaagttacaaaggaaggactaatgcagaagagtgagtagaaggggatatgaaaagaaagagactcacnnnnnnngcatcccataattttactgttttat |
116 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35241397 |
tcaagttacaatggaaggactaatgcagaagagtgagtagaaggggatatgaaaagaaagagactcactttttttgcatcccataattttactgttttat |
35241496 |
T |
|
| Q |
117 |
cagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatggtagatgaatgtgactctgaagtagtaacagaactaaaagtatc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||| || ||| || |
|
|
| T |
35241497 |
cagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacttctaagatggtagatgaatgtgactttgacgtagtaacacaatcgccagtgtc |
35241596 |
T |
|
| Q |
217 |
catgtagcaaatgaaaggctgtataaaccacaatataaagataaatacatta-------------tgcagacaataaaaagattgaattggaatatttct |
303 |
Q |
| |
|
||||| ||||||||||||||| ||||||| ||||||||||||||||||||| || ||||| |||| ||| |||||| | | || | |
|
|
| T |
35241597 |
gatgtaacaaatgaaaggctgtttaaaccataatataaagataaatacattacgcagacacgtagtggagacagtaaacagacgaaattgggaaacttat |
35241696 |
T |
|
| Q |
304 |
cgcattgattattcacctttccgctgttcccaccacttgctacaatctttccatctgatgaaaaatcgcaggacgaaagtgtctcaccgctttgaaaacc |
403 |
Q |
| |
|
|||||| |||||||||||| ||||| ||||||| |||||||| ||| |||||||| ||||||||||| |||||| |||| | | || ||| |||||| |
|
|
| T |
35241697 |
cgcattaattattcaccttcccgcttttcccacaacttgctagaatatttccatccgatgaaaaatcacaggacaaaagcttttgactacttgtaaaacc |
35241796 |
T |
|
| Q |
404 |
tt-gtgtaagaaataaaaataaagattgaatcaactaaatttccttaattgtcatctcaaat---tcact--agatactaacaagaactttgtgaagtat |
497 |
Q |
| |
|
|| |||| ||||||||||||||| || ||||||||||||||||| | |||||||| |||||| | ||| || |||||||||| | |||||||||||| |
|
|
| T |
35241797 |
ttggtgttagaaataaaaataaacatcgaatcaactaaatttccatcattgtcatttcaaattgataactgaagctactaacaag-attttgtgaagtat |
35241895 |
T |
|
| Q |
498 |
atgaaatgacagaattgggatgccagagatgtatagaatagaaattt |
544 |
Q |
| |
|
|| |||||||||||||| ||||||| ||||| | ||||||||||||| |
|
|
| T |
35241896 |
at-aaatgacagaattgtgatgccaaagatgcaaagaatagaaattt |
35241941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 19 - 544
Target Start/End: Original strand, 35253630 - 35254163
Alignment:
| Q |
19 |
aagttacaaaggaaggactaatgcagaagagtgagtagaaggggatatgaaaagaaagagactcacnnnnnnngcatcccataattttactgttttatca |
118 |
Q |
| |
|
|||||||| |||||||| ||||||||| |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35253630 |
aagttacataggaaggaataatgcagatgagtgagtagaaggagatgtgaaaagaaagagactcacactgtttgcatcccataattttactgttttatca |
35253729 |
T |
|
| Q |
119 |
gcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatggtagatgaatgtgactctgaagtagtaacagaactaaaagtatcca |
218 |
Q |
| |
|
|||||||| |||||||| | ||| |||||||||||||||||||| || ||||||||| | |||||||||| | | ||||||||| | ||| |||| |
|
|
| T |
35253730 |
gcagaagaggttgcaaacacagttgatcctggttgaaatctaacttcgaagatggtatctaaatgtgactccaatgccgtaacagaaagaccagtttcca |
35253829 |
T |
|
| Q |
219 |
tgtagcaaatgaaaggctgtataaaccacaatat----aaagataaatacatt--atgca------gacaataaaaagattgaattggaatatttctcgc |
306 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| || |||||||||||| || | ||||| ||| | || || ||| || |||| || |
|
|
| T |
35253830 |
ggtagcaaatgaaaggctatataaaccacaatataaggaaggataaatacattggatagacaaagtgacaacaaacaaatggatttgaaaaatttatcat |
35253929 |
T |
|
| Q |
307 |
attgattattcacctttccgctgttcccaccacttgctacaatctttccatctgatgaaaaatcgcaggacgaaagtgtctcaccgctttgaaaaccttg |
406 |
Q |
| |
|
|| ||||||||||||| | |||||||||||||||||||||||||||| ||||| |||||||||||| |||| | | ||||||| || |||||| |
|
|
| T |
35253930 |
atagattattcaccttcttcccaatcccaccacttgctacaatctttccatccgatgataaatcgcaggacaaaagactttgaccgcttgaaataccttg |
35254029 |
T |
|
| Q |
407 |
tgtaagaaataaaaataaagattgaatcaactaaatttccttaattgtcatctcaaattcactagatactaacaagaactttgtgaagtatatgaaatga |
506 |
Q |
| |
|
||| ||||||||||||||| ||| ||||||||||||||||||||||||||||| || ||||| |||||||| | ||||||||||||||||||| |
|
|
| T |
35254030 |
tgttagaaataaaaataaacatttaatcaactaaatttccttaattgtcatctaaatttcac----aactaacaaatatcatgtgaagtatatgaaatga |
35254125 |
T |
|
| Q |
507 |
cagaattgggatgccagagatgtatagaatagaaattt |
544 |
Q |
| |
|
|||||||| ||||||| ||||||||||||| |||||| |
|
|
| T |
35254126 |
cagaattgtgatgccaacgatgtatagaatataaattt |
35254163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 13 - 265
Target Start/End: Original strand, 35283695 - 35283934
Alignment:
| Q |
13 |
atcatcaagttacaaaggaaggactaatgcagaagagtgagtagaaggggatatgaaaagaaagagactcacnnnnnnngcatcccataattttactgtt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
35283695 |
atcatcaagttacaaaggaaggactaatgcagaagagtgagtagaag-------------aaagagactcactttttttgcatcccataattttactgtt |
35283781 |
T |
|
| Q |
113 |
ttatcagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatggtagatgaatgtgactctgaagtagtaacagaactaaaag |
212 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| || || ||||||||||| |||||||||||||| |||||||||||| || | |
|
|
| T |
35283782 |
ttatcagcagaagatgttgcaaatatagttgatcctggttgaaatctcacgtcaaagatggtagacgaatgtgactctgacgtagtaacagaatcaagac |
35283881 |
T |
|
| Q |
213 |
tatccatgtagcaaatgaaaggctgtataaaccacaatataaagataaataca |
265 |
Q |
| |
|
| |||| || |||||||||||||| ||| ||||||||||||| ||||||||| |
|
|
| T |
35283882 |
tttccacgttgcaaatgaaaggctatattaaccacaatataaccataaataca |
35283934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 35287228 - 35287400
Alignment:
| Q |
17 |
tcaagttacaaaggaaggactaatgcagaagagtgagtagaagggg-atatgaaaa-gaaagagactcacnnnnnnngcatcccataattttactgtttt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
35287228 |
tcaagttacaaaggaaggactaatgcagaagagtgagtagaagggggatgtgaaaaagaaagagactcactttttttgcatcccataattttactgtttt |
35287327 |
T |
|
| Q |
115 |
atcagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatggtagatgaatgtgac |
187 |
Q |
| |
|
||||||||| ||||||||||||||||| || ||||||| |||||||||||| ||||| |||||| |||||||| |
|
|
| T |
35287328 |
atcagcagaggatgttgcaaatatagttgaacctggtttaaatctaacatcgaagatagtagataaatgtgac |
35287400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 20 - 460
Target Start/End: Original strand, 35271507 - 35271957
Alignment:
| Q |
20 |
agttacaaaggaaggactaatgcagaagagtgagtagaaggggatatgaaaagaaagagactcacnnnnnnn------gcatcccataattttactgttt |
113 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||| | || ||||||||||| ||| || || | ||||| |||||||||| |
|
|
| T |
35271507 |
agttacaaaggaaagactattgcagaagagtgagtagaaggagctaagaaaagaaagaaacttactcttgttctttttgcgtgccatagttttactgttc |
35271606 |
T |
|
| Q |
114 |
tatcagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatggtagatgaatgtgactctgaagtagtaacagaactaaaagt |
213 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||| | ||||||| || |||||||||| | | |||||| |||||| || |||| |||| || ||| |
|
|
| T |
35271607 |
tatcagcagaagaagttgcaaatataggtgatcctgatcgaaatctgacttctaagatggcatctaaatgtgtctctgatgttgtaaaagaattaccagt |
35271706 |
T |
|
| Q |
214 |
atccatgtagcaaatgaaaggctgtataaaccacaatataaagataaatacattatgca----gacaataaaaagattgaattggaatatttctcgcatt |
309 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||| ||| | |||||| || || |||| | |||||||||||| |||| | ||||| |
|
|
| T |
35271707 |
ttccatgtagcaaatgaaaggctatttaaaccacaatataaggatcagtacattgcacaacgtgagggtaaacaaattgaattggaaaatttattgcatt |
35271806 |
T |
|
| Q |
310 |
gattattcacct--ttccgctgttcccaccacttgctacaatctttccatctgatgaaaaatcgcaggacgaaagtgtctcaccgctttgaaaaccttgt |
407 |
Q |
| |
|
|||||||||| |||| || ||||||||||| |||||||||||||||||||||||||| |||||| |||| ||| |||||||||||||||||| |
|
|
| T |
35271807 |
atttattcacctgcttcccaagt--ccaccacttgcaacaatctttccatctgatgaaaaatcacaggacaaaagcttctgaccgctttgaaaaccttga |
35271904 |
T |
|
| Q |
408 |
gtaagaaataaaaataaagattgaatcaactaaatttccttaattgtcatctc |
460 |
Q |
| |
|
|| |||| | |||| | |||||||||| ||||| ||||||||||||||||| |
|
|
| T |
35271905 |
gtttaaaattagaatagacattgaatcaattaaatgtccttaattgtcatctc |
35271957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 92 - 267
Target Start/End: Original strand, 35247083 - 35247258
Alignment:
| Q |
92 |
gcatcccataattttactgttttatcagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatggtagatgaatgtgactctg |
191 |
Q |
| |
|
|||||||||| |||||||||| |||| ||||| |||||||||| |||| ||| ||||||||||||||| ||||||||| || | ||| ||||||| |
|
|
| T |
35247083 |
gcatcccatagttttactgttccatcacgagaagttgttgcaaatctagttgattttggttgaaatctaacttctaagatgatatctaaatctgactcta |
35247182 |
T |
|
| Q |
192 |
aagtagtaacagaactaaaagtatccatgtagcaaatgaaaggctgtataaaccacaatataaagataaatacatt |
267 |
Q |
| |
|
| | |||||||||| | | | |||| ||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
35247183 |
atgcagtaacagaagcacgactttccacgtagcaaatgaaaggctatataaaccacaatatatggataaatacatt |
35247258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 331 - 433
Target Start/End: Original strand, 35247356 - 35247458
Alignment:
| Q |
331 |
tcccaccacttgctacaatctttccatctgatgaaaaatcgcaggacgaaagtgtctcaccgctttgaaaaccttgtgtaagaaataaaaataaagattg |
430 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||||| ||| ||| | |||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
35247356 |
tcccaccacttgctataatctttccatcagatgaaaaatcgcaggacataagcttctgattgcttagaaaaccttgtgtaagaaataaaaataaacattg |
35247455 |
T |
|
| Q |
431 |
aat |
433 |
Q |
| |
|
||| |
|
|
| T |
35247456 |
aat |
35247458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 94 - 237
Target Start/End: Original strand, 35238385 - 35238528
Alignment:
| Q |
94 |
atcccataattttactgttttatcagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatggtagatgaatgtgactctgaa |
193 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| |||||||||||| | | |||||||||||||||||| ||| |||| | || ||||||||||| ||| |
|
|
| T |
35238385 |
atcccataattttactgctttatcagaggaagaagttgcaaatatatttgttcctggttgaaatctaacttctgagataggagctgaatgtgactgtgat |
35238484 |
T |
|
| Q |
194 |
gtagtaacagaactaaaagtatccatgtagcaaatgaaaggctg |
237 |
Q |
| |
|
||||||| | || | | |||||||||||||| || |||||||| |
|
|
| T |
35238485 |
gtagtaatacaatcacaggtatccatgtagcatattaaaggctg |
35238528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 332 - 382
Target Start/End: Original strand, 35284032 - 35284082
Alignment:
| Q |
332 |
cccaccacttgctacaatctttccatctgatgaaaaatcgcaggacgaaag |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35284032 |
cccaccacttgctacaatctttccatctgatgaaaaatcgcaggacaaaag |
35284082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 470 - 541
Target Start/End: Original strand, 35247504 - 35247575
Alignment:
| Q |
470 |
agatactaacaagaactttgtgaagtatatgaaatgacagaattgggatgccagagatgtatagaatagaaa |
541 |
Q |
| |
|
||||||||||||| | |||||||||| |||||||||||||||||| ||||||| |||||| |||||||||| |
|
|
| T |
35247504 |
agatactaacaaggattttgtgaagtttatgaaatgacagaattgtgatgccaacgatgtaaagaatagaaa |
35247575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 120 - 243
Target Start/End: Original strand, 35275605 - 35275728
Alignment:
| Q |
120 |
cagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatggtagatgaatgtgactctgaagtagtaacagaactaaaagtatccat |
219 |
Q |
| |
|
||||||| ||||||||||||| ||| ||||||||||||||| |||||||||| | ||||||| ||||| | |||||||||| || | | ||||| |
|
|
| T |
35275605 |
cagaagaagttgcaaatataggtgatgctggttgaaatctaaattctaagatggcatctgaatgttactctattgaagtaacagaattaccaatttccat |
35275704 |
T |
|
| Q |
220 |
gtagcaaatgaaaggctgtataaa |
243 |
Q |
| |
|
||||||||||||||||| |||||| |
|
|
| T |
35275705 |
gtagcaaatgaaaggctatataaa |
35275728 |
T |
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