View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5767_high_7 (Length: 378)
Name: NF5767_high_7
Description: NF5767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5767_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 3 - 358
Target Start/End: Complemental strand, 27686215 - 27685860
Alignment:
| Q |
3 |
gctagattattctttatggctccttcaagcaatgcctattggccaccttcccccggttactggccaagttccaaagtcaggtctatgagcttttataatg |
102 |
Q |
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| T |
27686215 |
gctagtttattctttatggcttcttcaagcaatgcctattggccaccttcccccggttactggccaagttccaaagtcaggtctatgagcttttacaatg |
27686116 |
T |
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| Q |
103 |
gttatagaaacctttggggacctcaacaccaaagcatggatcaacatggaacaactatttggcttgatagaacctcaggtatgaatctgattagtttcaa |
202 |
Q |
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| T |
27686115 |
gttatagaaacctttggggacctcaacaccaaagcatggatcaacatggaacaactatttggcttgatagaacctcaggtatgaatctgattagtttcaa |
27686016 |
T |
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| Q |
203 |
ttcactttagtttagatactttatcgaccggaaaaattacaatggcacgatttgatctcgcaaaatttatcgcaaattcaagcatgcacaaaatatatca |
302 |
Q |
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| T |
27686015 |
ttcactttagtttagatactttatcgaccggaaaaattacaatggcacgatttgatttcgcgaaatttatcgcaaattcaagcatgcacaaaatatatca |
27685916 |
T |
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| Q |
303 |
ttgacatgtaacactacannnnnnnncttctgattaataggaagtgggttcaagtc |
358 |
Q |
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| T |
27685915 |
ttgacatgtaacactacattttttttcttctgattaataggaagtggattcaagtc |
27685860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 26 - 182
Target Start/End: Original strand, 41268459 - 41268615
Alignment:
| Q |
26 |
ttcaagcaatgcctattggccaccttcccccggttactggccaagttccaaagtcaggtctatgagcttttataatggttatagaaacctttggggacct |
125 |
Q |
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|||||||||||| |||||||||||||| || || |||||||||||||| || ||| |||||||| |||||| || |||| || ||||| |||||| ||| |
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| T |
41268459 |
ttcaagcaatgcttattggccaccttcacctggctactggccaagttcaaagttcaagtctatgaacttttacaaaggttttacaaaccgttggggccct |
41268558 |
T |
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| Q |
126 |
caacaccaaagcatggatcaacatggaacaactatttggcttgatagaacctcaggt |
182 |
Q |
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| T |
41268559 |
caacaccaaagactagaacaaaatgcattaactatttggcttgatagaacctcaggt |
41268615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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