View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5767_high_8 (Length: 331)
Name: NF5767_high_8
Description: NF5767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5767_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 13 - 315
Target Start/End: Complemental strand, 22339378 - 22339076
Alignment:
| Q |
13 |
catcacaatcagtcaccaacacataccacccaagtcttctaatattttccaatcccaaaacattatctcccaccgttggattacaatactcataatcacg |
112 |
Q |
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| T |
22339378 |
catcacaatcagtcaccaacacacaccacccaagtcttctaatattttccaatcccaaaacactatctcccaccgttggattacaatactcataatcacg |
22339279 |
T |
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| Q |
113 |
gtcaactccaacgggtaatgataactcccacaacatatcattgctacacaataacaaatgagactcattagcaagcctaacctctgaatgtgtcctatga |
212 |
Q |
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| T |
22339278 |
gttaactccaacgggtaatgataactcccacaacatatcattgttacacaataacaaatgagactcattagcaagcctaacctctgaatgtgtcctatga |
22339179 |
T |
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| Q |
213 |
attccactnnnnnnnggttgaatcaatataagccctttgatcatcttggatatttcatcttctgctttggctacacgtagacccgcgttgtatgcgatat |
312 |
Q |
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| T |
22339178 |
attccactaaaaaaaggttgaatcaatataagccctttgatcatcttggatatttcatcttctgctttggctacacgtagacccgtgttgtatgcgatat |
22339079 |
T |
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| Q |
313 |
ttc |
315 |
Q |
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||| |
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| T |
22339078 |
ttc |
22339076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 46138590 - 46138630
Alignment:
| Q |
84 |
accgttggattacaatactcataatcacggtcaactccaac |
124 |
Q |
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| T |
46138590 |
accgttggattacaatactcatgatcacggtcaactccaac |
46138630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 121
Target Start/End: Original strand, 46140504 - 46140542
Alignment:
| Q |
83 |
caccgttggattacaatactcataatcacggtcaactcc |
121 |
Q |
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| T |
46140504 |
caccgttggattacaatactcataatcacgatcaactcc |
46140542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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