View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5767_high_9 (Length: 298)
Name: NF5767_high_9
Description: NF5767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5767_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 52600609 - 52600894
Alignment:
| Q |
1 |
ctgacaatgataacctgaattcttaaagtcttaatcatgatgcaccaatgttactattatattacataatatcaaattgagttttctacctttggtaatt |
100 |
Q |
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| T |
52600609 |
ctgacaatgagaacctgaattcttaaagtcttaatcatgatgcaccaatgttactattatattacataatatcaaattgagttttctacctttggtaatt |
52600708 |
T |
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| Q |
101 |
gtggctcatataaattcacttacttattgaggactacttgtgttttgacagggaaagttggcagatggaaggctagttgcttgtaagaaattgtctcttg |
200 |
Q |
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| T |
52600709 |
gtggctcatataaattcacttacttattgaggactacttgtgttttgacagggaaagttggcagatggaaggctagttgcttgtaagaaattgtctcttg |
52600808 |
T |
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| Q |
201 |
acaaatctcaccaaggagaaagagaatttctagcagaagtgagaatgatcacaagtatccagcataaaaatcttgttcgccttctc |
286 |
Q |
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| T |
52600809 |
acaaatctcaccaaggagaaagagaatttctagcagaagtgagaatgatcacaagcatccagcataaaaatcttgttcgccttctc |
52600894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 141 - 285
Target Start/End: Complemental strand, 16912478 - 16912334
Alignment:
| Q |
141 |
tgttttgacagggaaagttggcagatggaaggctagttgcttgtaagaaattgtctcttgacaaatctcaccaaggagaaagagaatttctagcagaagt |
240 |
Q |
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|||||||| |||||||||||| |||||||||| | ||||| |||| ||| |||||| |||||||||| |||||||||||||||||| | || || || |
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| T |
16912478 |
tgttttgatagggaaagttggaagatggaaggatcattgctgttaaggcattatctcttaacaaatctcaacaaggagaaagagaatttttggctgaggt |
16912379 |
T |
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| Q |
241 |
gagaatgatcacaagtatccagcataaaaatcttgttcgccttct |
285 |
Q |
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| T |
16912378 |
taaattgatcacaagtatccaacacaaaaatttggttcgccttct |
16912334 |
T |
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