View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5767_low_13 (Length: 240)

Name: NF5767_low_13
Description: NF5767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5767_low_13
NF5767_low_13
[»] chr2 (1 HSPs)
chr2 (1-224)||(42027594-42027817)
[»] chr7 (4 HSPs)
chr7 (1-212)||(19278744-19278955)
chr7 (59-203)||(27308233-27308377)
chr7 (73-129)||(23484594-23484650)
chr7 (47-105)||(38645464-38645522)
[»] chr3 (5 HSPs)
chr3 (1-203)||(54653479-54653681)
chr3 (15-212)||(13077465-13077662)
chr3 (1-200)||(51825128-51825327)
chr3 (1-225)||(47807227-47807450)
chr3 (141-224)||(43102901-43102984)
[»] chr1 (1 HSPs)
chr1 (1-187)||(3978840-3979026)
[»] chr4 (3 HSPs)
chr4 (12-212)||(26788928-26789129)
chr4 (1-187)||(3217138-3217324)
chr4 (117-181)||(44502975-44503039)
[»] chr5 (3 HSPs)
chr5 (3-225)||(10085340-10085561)
chr5 (61-199)||(1663996-1664134)
chr5 (154-203)||(27893375-27893424)
[»] chr8 (1 HSPs)
chr8 (64-128)||(42193494-42193558)


Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 42027594 - 42027817
Alignment:
Q  1 ttgaactactttcatcttcctcttcaaaaaaccacaaacatattattagattggtaaaattttaaaaactctaaccaccaccttctctcttacttttcgg 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||| |||    
T  42027594 ttgaactactctcatcttcctcttcaaaaaaccacaaacatattattagattggtaaaattttaaaaaccctaagcatcaccttctctcttactttccgg 42027693  T
Q  101 ccaccataaatctccatttgaaaaactaatatgattttcttcttccccataatgtctgcaacaaaacccctaaatttattttgggatcgaaaaactttca 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42027694 ccaccacaaatctccatttgaaaaactaatatgattttcttcttccccataatgtctgcaacaaaatccctaaatttattttgggatcgaaaaactttca 42027793  T
Q  201 ccgaagaccaccacgtcagaaact 224  Q
    |||| ||||||| |||| ||||||    
T  42027794 ccgacgaccaccgcgtcggaaact 42027817  T

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Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 19278744 - 19278955
Alignment:
Q  1 ttgaactactttcatcttcctcttcaaaaaaccacaaacatattattagattggtaaaattttaaaaactctaaccaccaccttctctcttacttttcgg 100  Q
    |||||||||| ||||||||||||||||||| |||| ||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||    
T  19278744 ttgaactactctcatcttcctcttcaaaaagccaccaacttattattagattggtaagattttaaaaaccctaaccaccaccttctctcttactttccgg 19278843  T
Q  101 ccaccataaatctccatttgaaaaactaatatgattttcttcttccccataatgtctgcaacaaaacccctaaatttattttgggatcgaaaaactttca 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||| || ||||||||||| | | ||||||||    
T  19278844 ccaccacaaatctccatttgaaaaactaatatgattttcttcttacccatgatgtctgcaacaaaactcctacatctattttgggattggagaactttca 19278943  T
Q  201 ccgaagaccacc 212  Q
    |||  |||||||    
T  19278944 ccggcgaccacc 19278955  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 203
Target Start/End: Complemental strand, 27308377 - 27308233
Alignment:
Q  59 attttaaaaactctaaccaccaccttctctcttacttttcggccaccataaatctccatttgaaaaactaatatgattttcttcttccccataatgtctg 158  Q
    |||| |||| ||| |||||||||||||| ||    ||||||||||||||   ||||  |||||||||||||  | || ||| |||||||||| |||||      
T  27308377 atttcaaaatctccaaccaccaccttctttccccattttcggccaccatgggtctcattttgaaaaactaaattaatattcatcttccccatgatgtcaa 27308278  T
Q  159 caacaaaacccctaaatttattttgggatcgaaaaactttcaccg 203  Q
    ||||||||||||  ||||||||| ||||| ||| |||||||||||    
T  27308277 caacaaaaccccccaatttatttcgggattgaagaactttcaccg 27308233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 23484650 - 23484594
Alignment:
Q  73 aaccaccaccttctctcttacttttcggccaccataaatctccatttgaaaaactaa 129  Q
    |||||||||||||||||||||||| |||||||| | || | |||||||| |||||||    
T  23484650 aaccaccaccttctctcttactttccggccaccttgaaccaccatttgagaaactaa 23484594  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 38645464 - 38645522
Alignment:
Q  47 tagattggtaaaattttaaaaactctaaccaccaccttctctcttacttttcggccacc 105  Q
    ||||||||| || ||| |||||| | ||| ||||| |||||||||||||||||||||||    
T  38645464 tagattggtgaagtttcaaaaaccccaactaccacattctctcttacttttcggccacc 38645522  T

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Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 54653681 - 54653479
Alignment:
Q  1 ttgaactactttcatcttcctcttcaaaaaaccacaaacatattattagattggtaaaattttaaaaactctaaccaccaccttctctcttacttttcgg 100  Q
    |||||||||| |||||||||| |||||||| |||| ||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |    
T  54653681 ttgaactactctcatcttcctattcaaaaagccaccaacttattattagattggtaagattttaaaaaccctaaccaccaccttctctcttacttttcag 54653582  T
Q  101 ccaccataaatctccatttgaaaaactaatatgattttcttcttccccataatgtctgcaacaaaacccctaaatttattttgggatcgaaaaactttca 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||| || ||||||||||| | | ||||||||    
T  54653581 ccaccacaaatctccatttgaaaaactaatatgattttcttcttacacatgatgtctgcaacaaaacccctacatctattttgggattggagaactttca 54653482  T
Q  201 ccg 203  Q
    |||    
T  54653481 ccg 54653479  T

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Target: chr3; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 15 - 212
Target Start/End: Complemental strand, 13077662 - 13077465
Alignment:
Q  15 tcttcctcttcaaaaaaccacaaacatattattagattggtaaaattttaaaaactctaaccaccaccttctctcttacttttcggccaccataaatctc 114  Q
    |||||||||||||||| |||| ||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||  |||||||    
T  13077662 tcttcctcttcaaaaagccaccaacttattattagattggtaagattttaaaaaccctaaccaccaccttctctcttactttccggccaccgcaaatctc 13077563  T
Q  115 catttgaaaaactaatatgattttcttcttccccataatgtctgcaacaaaacccctaaatttattttgggatcgaaaaactttcaccgaagaccacc 212  Q
    ||||  |||||||||||||||||| ||||||||||| |||||||||||||||||| || |||||||||||||||| | |||||||||||  |||||||    
T  13077562 cattcaaaaaactaatatgattttattcttccccatcatgtctgcaacaaaacccatatatttattttgggatcggagaactttcaccggcgaccacc 13077465  T

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Target: chr3; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 51825327 - 51825128
Alignment:
Q  1 ttgaactactttcatcttcctcttcaaaaaaccacaaacatattattagattggtaaaattttaaaaactctaaccaccaccttctctcttacttttcgg 100  Q
    |||||||||| | |||||||||||||||||  ||  ||  ||||||||||||| ||| ||||||||||| |||||| ||||||||||||||||||| | |    
T  51825327 ttgaactactcttatcttcctcttcaaaaaggcatcaagttattattagattgataagattttaaaaaccctaacccccaccttctctcttactttccag 51825228  T
Q  101 ccaccataaatctccatttgaaaaactaatatgattttcttcttccccataatgtctgcaacaaaacccctaaatttattttgggatcgaaaaactttca 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||| ||||| || |||||    
T  51825227 ccaccacaaatctccatttgaaaaactaatatgattttcttcttcctcattatgtctgcaacaaaacccctatatttattttggggtcgaagaaatttca 51825128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 47807227 - 47807450
Alignment:
Q  1 ttgaactactttcatcttcctcttcaaaaaaccacaaacatattattagattggtaaaattttaaaaactctaaccaccaccttctctcttacttttcgg 100  Q
    |||||||||| |||||||||||||| ||||  ||| ||| ||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||| |||    
T  47807227 ttgaactactctcatcttcctcttcgaaaaggcaccaacttattattagattg-taagattttaaaaaccctaaccaccaccttctctctcactttccgg 47807325  T
Q  101 ccaccataaatctccatttgaaaaactaatatgattttcttcttccccataatgtctgcaacaaaacccctaaatttattttgggatcgaaaaactttca 200  Q
    |||||| | ||||| ||||||||||||||||||||||||||||| |   | |||||||||||||||||| || |||||||||||||||||| |||||||     
T  47807326 ccaccacatatctcgatttgaaaaactaatatgattttcttctttcatgtgatgtctgcaacaaaacccgtatatttattttgggatcgaagaactttcg 47807425  T
Q  201 ccgaagaccaccacgtcagaaactg 225  Q
    |||  ||||||| || | |||||||    
T  47807426 ccggcgaccaccgcgccggaaactg 47807450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 141 - 224
Target Start/End: Complemental strand, 43102984 - 43102901
Alignment:
Q  141 tcttccccataatgtctgcaacaaaacccctaaatttattttgggatcgaaaaactttcaccgaagaccaccacgtcagaaact 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||| ||||||    
T  43102984 tcttccccataatgtctgcaacaaaacccctaaatttattttgggatcgaaaaactttcaccgacgatcaccgcgtcggaaact 43102901  T

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Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 3979026 - 3978840
Alignment:
Q  1 ttgaactactttcatcttcctcttcaaaaaaccacaaacatattattagattggtaaaattttaaaaactctaaccaccaccttctctcttacttttcgg 100  Q
    |||||||||| ||||||||||||||||||| |||| ||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||| |||    
T  3979026 ttgaactactctcatcttcctcttcaaaaagccaccaacttattattagattggtaagattttaaaaaccctaaccaccaccttctctcctactttccgg 3978927  T
Q  101 ccaccataaatctccatttgaaaaactaatatgattttcttcttccccataatgtctgcaacaaaacccctaaatttattttgggat 187  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| || |||||||||||    
T  3978926 ccaccacaaatctccatttgaaaaactaatatgattttcttcttacccatgatgtctgcaacaaaacccctacatctattttgggat 3978840  T

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Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 12 - 212
Target Start/End: Original strand, 26788928 - 26789129
Alignment:
Q  12 tcatcttcctcttcaaaaaaccacaaacatattattagattggtaaaattttaaaaactctaaccaccaccttctctcttacttttcggccaccataaat 111  Q
    ||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||| ||||||||| ||||    
T  26788928 tcatcttcctcttcaaaaagccaccaacttattattagattggtaaaattttaaaaaccctaaccgccaccttctctcttattttccggccaccacaaat 26789027  T
Q  112 ctccatttgaaaaactaatatgattttcttcttccccataatgtctgcaacaaaacccctaaattta-ttttgggatcgaaaaactttcaccgaagacca 210  Q
    |||| ||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||| ||||| ||||||||||| | |||||||| ||| |||||    
T  26789028 ctccgtttgaaaaattaatatgattttcttcttctccattatgtctgcaacaaaacccctatatttatttttgggatcggataactttcatcgacgacca 26789127  T
Q  211 cc 212  Q
    ||    
T  26789128 cc 26789129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 3217324 - 3217138
Alignment:
Q  1 ttgaactactttcatcttcctcttcaaaaaaccacaaacatattattagattggtaaaattttaaaaactctaaccaccaccttctctcttacttttcgg 100  Q
    |||||||||| | |||||||||||||||||  ||| ||| ||||||||||||| ||| ||||||||||| |||||   |||||||||||||| ||| |||    
T  3217324 ttgaactactcttatcttcctcttcaaaaaggcaccaacttattattagattgttaagattttaaaaaccctaactctcaccttctctcttattttccgg 3217225  T
Q  101 ccaccataaatctccatttgaaaaactaatatgattttcttcttccccataatgtctgcaacaaaacccctaaatttattttgggat 187  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  3217224 ccaccacaaatctctatttgaaaaactaatatgattttcttcttccccataatgtttgcaacaaaacccctatatttattttgggat 3217138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 44503039 - 44502975
Alignment:
Q  117 tttgaaaaactaatatgattttcttcttccccataatgtctgcaacaaaacccctaaatttattt 181  Q
    ||||| |||||||  |||| ||||| ||||||||||| ||| ||||||||||||||| |||||||    
T  44503039 tttgagaaactaaattgatattcttattccccataatttcttcaacaaaacccctaagtttattt 44502975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 3 - 225
Target Start/End: Complemental strand, 10085561 - 10085340
Alignment:
Q  3 gaactactttcatcttcctcttcaaaaaaccacaaacatattattagattggtaaaattttaaaaactctaaccac-caccttctctcttacttttcggc 101  Q
    |||||||| | || ||||||||||||||  ||| ||| ||||||||||||| ||| |||| |||||| |||| | | |||||||||||||||||| ||||    
T  10085561 gaactactcttatattcctcttcaaaaaggcaccaacttattattagattgttaagatttaaaaaac-ctaaactctcaccttctctcttactttccggc 10085463  T
Q  102 caccataaatctccatttgaaaaactaatatgattttcttcttccccataatgtctgcaacaaaacccctaaatttattttgggatcgaaaaactttcac 201  Q
    ||||| ||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||  | |||||||||    
T  10085462 caccacaaatctttatttgaaaaactaatatgattttcttcttccccatgatgtctgcaacaaaa-ccctatatttattttgggatcagagaactttcac 10085364  T
Q  202 cgaagaccaccacgtcagaaactg 225  Q
    ||  |||||| ||| | |||||||    
T  10085363 cggcgaccactacgccggaaactg 10085340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 61 - 199
Target Start/End: Complemental strand, 1664134 - 1663996
Alignment:
Q  61 tttaaaaactctaaccaccaccttctctcttacttttcggccaccataaatctccatttgaaaaactaatatgattttcttcttccccataatgtctgca 160  Q
    |||||||||  ||||||||||||||||||||||||| || | |||| ||||||| ||||||||||||||||||||||||||||||||  | |||||||||    
T  1664134 tttaaaaaccataaccaccaccttctctcttactttccgactaccacaaatctcaatttgaaaaactaatatgattttcttcttccctgtgatgtctgca 1664035  T
Q  161 acaaaacccctaaatttattttgggatcgaaaaactttc 199  Q
    |||||||||||| |||||||||||||||||| |||||||    
T  1664034 acaaaacccctatatttattttgggatcgaagaactttc 1663996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 27893375 - 27893424
Alignment:
Q  154 gtctgcaacaaaacccctaaatttattttgggatcgaaaaactttcaccg 203  Q
    ||||||||||||||||| | || ||||||||||||| | |||||||||||    
T  27893375 gtctgcaacaaaaccccaatatatattttgggatcggagaactttcaccg 27893424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 42193494 - 42193558
Alignment:
Q  64 aaaaactctaaccaccaccttctctcttacttttcggccaccataaatctccatttgaaaaacta 128  Q
    |||||| | |||||||||||||||||||||||| | ||||||||  | | |||| ||||||||||    
T  42193494 aaaaaccccaaccaccaccttctctcttactttccagccaccatggaccaccatctgaaaaacta 42193558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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