View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5767_low_15 (Length: 238)
Name: NF5767_low_15
Description: NF5767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5767_low_15 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 27 - 238
Target Start/End: Complemental strand, 27184211 - 27184000
Alignment:
| Q |
27 |
tagactcataaaccttcaggttgaaaactttaagcttttactacaaaagcaattaactgtttattcctccaattggaccaaggtttttcttgtagagtac |
126 |
Q |
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| T |
27184211 |
tagactcataaaccttcaggttgaaaactttaagctgttactacaaaagcaattaactgtttattcctccaattggaccaaggtttttcttgtagagtac |
27184112 |
T |
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| Q |
127 |
aatttgacatacatgacttgcacctttaaaaccgatctcctcaatcacctcggttgttaaatcaaaacaagctattttaccattctttttatttatgaat |
226 |
Q |
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| T |
27184111 |
aatttgacatacgcgacttgcacctttaaaatcgatctcctcaatcacctcggttgttaaatcaaaacaagctattttaccattctttttatttatgaat |
27184012 |
T |
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| Q |
227 |
atatttccgttc |
238 |
Q |
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|||||||||||| |
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| T |
27184011 |
atatttccgttc |
27184000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 27230014 - 27230247
Alignment:
| Q |
1 |
ttaatacatcattaaatctgagtaactagactcataaaccttcaggttgaaaactttaagcttttactacaaaagcaattaactgtttattcctccaatt |
100 |
Q |
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| T |
27230014 |
ttaataaagcattaaatcttagtaactagactcataaatctcctggttgaaaactttaagctttgactacaaaagcaattaactgtttattcctccaatt |
27230113 |
T |
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| Q |
101 |
ggaccaaggtttttcttgtagagtacaatttgacatacatgacttgcacctttaaaaccgatctcctcaatcacctcggttgttaaatcaaaacaagcta |
200 |
Q |
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| T |
27230114 |
ggaccaaggtttttcttgtaatgtactatttgacaaatatgaatttctcttttaaaaccgatctcctcaatcaccttggttgttaaatcaaagcaagcta |
27230213 |
T |
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| Q |
201 |
ttttaccattctttttatttatgaatatatttcc |
234 |
Q |
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| T |
27230214 |
ttttaccattctctatacttaagaatatatttcc |
27230247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 231
Target Start/End: Original strand, 13472793 - 13472878
Alignment:
| Q |
149 |
cctttaaaaccgatctcctcaatcacc-tc--ggttgttaaatcaaaacaagctattttaccattctttttatttatgaatatatt |
231 |
Q |
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| T |
13472793 |
cctttaacatcgatctcctcaatcatcatcatggtagttaaatcaaaacaagctattttaccatcttttttattgaagaatatatt |
13472878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 19163113 - 19163163
Alignment:
| Q |
150 |
ctttaaaaccgatctcctcaatcacctcggttgttaaatcaaaacaagcta |
200 |
Q |
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| T |
19163113 |
ctttaacaccaatctcctcaatcatcccggtagttaaatcaaaacaagcta |
19163163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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