View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5767_low_17 (Length: 225)

Name: NF5767_low_17
Description: NF5767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5767_low_17
NF5767_low_17
[»] chr4 (1 HSPs)
chr4 (1-104)||(37098084-37098187)
[»] chr7 (1 HSPs)
chr7 (48-125)||(26866623-26866700)
[»] chr8 (2 HSPs)
chr8 (48-125)||(44367290-44367371)
chr8 (161-209)||(17595121-17595169)
[»] chr3 (1 HSPs)
chr3 (161-209)||(46560727-46560775)
[»] chr5 (3 HSPs)
chr5 (64-96)||(3290073-3290105)
chr5 (61-133)||(4484093-4484165)
chr5 (86-126)||(33467375-33467415)


Alignment Details
Target: chr4 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 37098187 - 37098084
Alignment:
Q  1 gtgttgtaactcaattactgacgattttgaagtgtacatttggatggaaattgtggttgatgaatatcatttatatttgaacacttgaaaatcatgtgta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37098187 gtgttgtaactcaattactgacgattttgaagtgtacatttggatggaaattgtggttgatgaatatcatttatatttgaacacttgaaaatcatgtgta 37098088  T
Q  101 tttg 104  Q
    ||||    
T  37098087 tttg 37098084  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 125
Target Start/End: Complemental strand, 26866700 - 26866623
Alignment:
Q  48 aaattgtggttgatgaatatcatttatatttgaacacttgaaaatcatgtgtatttgaactcaatttggatgattaat 125  Q
    ||||||||||| ||||||||||| ||||||||||||| ||||||| || | | ||||||| |||||| |||| |||||    
T  26866700 aaattgtggttaatgaatatcatgtatatttgaacacctgaaaataatttatttttgaacacaatttagatggttaat 26866623  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 125
Target Start/End: Complemental strand, 44367371 - 44367290
Alignment:
Q  48 aaattgtggttgatgaatatcatttata----tttgaacacttgaaaatcatgtgtatttgaactcaatttggatgattaat 125  Q
    ||||||||||| ||||||||||| ||||    ||||||||| | |||||||||||||||||||  || ||||||||||||||    
T  44367371 aaattgtggttaatgaatatcatatataaatatttgaacaccttaaaatcatgtgtatttgaatccagtttggatgattaat 44367290  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 17595121 - 17595169
Alignment:
Q  161 tggttaattgtttttactggatgattaatgggttgtgacaccttgttat 209  Q
    ||||||||||| ||||  |||||||||||| |||| |||||||||||||    
T  17595121 tggttaattgtatttaacggatgattaatgagttgagacaccttgttat 17595169  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 46560727 - 46560775
Alignment:
Q  161 tggttaattgtttttactggatgattaatgggttgtgacaccttgttat 209  Q
    |||||||||||||| | || |||||||||| ||||||||||||||||||    
T  46560727 tggttaattgttttcagtgaatgattaatgagttgtgacaccttgttat 46560775  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 96
Target Start/End: Original strand, 3290073 - 3290105
Alignment:
Q  64 atatcatttatatttgaacacttgaaaatcatg 96  Q
    ||||||| |||||||||||||||||||||||||    
T  3290073 atatcatctatatttgaacacttgaaaatcatg 3290105  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 133
Target Start/End: Complemental strand, 4484165 - 4484093
Alignment:
Q  61 tgaatatcatttatatttgaacacttgaaaatcatgtgtatttgaactcaatttggatgattaatgagtatat 133  Q
    |||||||||| | ||||||||||    |||||||| | ||||||||| ||| ||||||| |||||||||||||    
T  4484165 tgaatatcatgtttatttgaacaacataaaatcatttatatttgaacacaacttggatggttaatgagtatat 4484093  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 33467375 - 33467415
Alignment:
Q  86 tgaaaatcatgtgtatttgaactcaatttggatgattaatg 126  Q
    |||||||||||| ||||||||| ||||||||| ||||||||    
T  33467375 tgaaaatcatgtatatttgaacacaatttggaggattaatg 33467415  T

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