View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5767_low_3 (Length: 498)
Name: NF5767_low_3
Description: NF5767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5767_low_3 |
 | |
|
| [»] scaffold0014 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 487
Target Start/End: Original strand, 31993421 - 31993879
Alignment:
| Q |
18 |
aatactccgccgtttccttatagtggaaaagattgaagaaggtaaatctccacagtagattatatccgatggcagtgttttgttcgactgcgtgattgcg |
117 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31993421 |
aatactccgtcgtttccttatagtggaaaagattgaagaaggtaaatctccacggtagattatatccgatg--------ttgttcgactgcgtgattgcg |
31993512 |
T |
|
| Q |
118 |
tcatttaattatgtgactccaatgaatctcattcccattagcttccacaattgctctaactccctttagttgatggtgggattgtaacccttggattggg |
217 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31993513 |
tcattta----tgtgactccaatgaatctcaatcccattagcttccacaattgctctaactccctttagttgatggtgggattgtaacccttcgattggg |
31993608 |
T |
|
| Q |
218 |
tcgtaaactacatacatgtacttgtcattactcaaatttttctcttttatgaaattgtaaactatatgtccctttaatttgtgtaagtttgctttgcctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31993609 |
tcgtaaactacatacatgtacttgtcattactcaaatttttctcttttatgaaattgtaaactatatgtccctttaatttgtgtaagtttgctttgcctt |
31993708 |
T |
|
| Q |
318 |
gccttgcctataagtcc-tgtctataggtgtttcatgcaccaacttatgcaattaaattggaatgattgttgaatggagtctgaaatctatcgttgggtt |
416 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
31993709 |
gccttgcctataagtccttgtctataggtgtttcatgcaccaacttatgcaataaaattggaatgattgttgaatggagtctgaagtctatcattgggtt |
31993808 |
T |
|
| Q |
417 |
aattgtttatgtaatggatttcggattaaaggagaaaagaaataacaaggattttgaatatggttgatgat |
487 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31993809 |
aattgtttatgtaatggatttcggataaaaggagaaaagaaataacaaggattttgaatatggttgatgat |
31993879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 362 - 483
Target Start/End: Original strand, 20975818 - 20975939
Alignment:
| Q |
362 |
tatgcaattaaattggaatgattgttgaatggagtctgaaatctatcgttgggttaattgtttatgtaatggatttcggattaaaggagaaaagaaataa |
461 |
Q |
| |
|
|||| ||||||||||||| ||||||||| | |||||||||| ||| |||| |||||||||||||||||| ||||| |||| ||||| || |||||||| |
|
|
| T |
20975818 |
tatgaaattaaattggaaagattgttgatagtagtctgaaatttatagttgtgttaattgtttatgtaatagattttggatagaaggacaagagaaataa |
20975917 |
T |
|
| Q |
462 |
caaggattttgaatatggttga |
483 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
20975918 |
taaggattttgaatatgattga |
20975939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 362 - 473
Target Start/End: Complemental strand, 15666977 - 15666866
Alignment:
| Q |
362 |
tatgcaattaaattggaatgattgttgaatggagtctgaaatctatcgttgggttaattgtttatgtaatggatttcggattaaaggagaaaagaaataa |
461 |
Q |
| |
|
|||| ||||| ||||||| ||||||||| | |||||||||| ||| |||| ||||| |||||||||||||||||| |||| |||| || |||||||| |
|
|
| T |
15666977 |
tatgaaattatattggaaagattgttgatggtagtctgaaatttatagttgtgttaactgtttatgtaatggattttggatagaagggcaagagaaataa |
15666878 |
T |
|
| Q |
462 |
caaggattttga |
473 |
Q |
| |
|
|||||||||||| |
|
|
| T |
15666877 |
caaggattttga |
15666866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 487
Target Start/End: Original strand, 68909 - 69035
Alignment:
| Q |
364 |
tgcaattaaattggaatgattgttgaatggagtctga---aatctatcgttgggttaattgtttatgtaatggatttcggattaaaggagaaaagaaata |
460 |
Q |
| |
|
||||||| |||||||| |||||||||||| ||||||| | | ||| ||| ||||| |||||||||||||||| |||| |||||||||| |||| |
|
|
| T |
68909 |
tgcaattgaattggaaagattgttgaatgaagtctgatcaagtttatagtttcattaataatttatgtaatggattttggatagaaggagaaaataaatt |
69008 |
T |
|
| Q |
461 |
acaaggattttgaatatggttgatgat |
487 |
Q |
| |
|
| ||||||||| |||||| |||||||| |
|
|
| T |
69009 |
ataaggattttaaatatgattgatgat |
69035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 233 - 316
Target Start/End: Original strand, 68768 - 68849
Alignment:
| Q |
233 |
atgtacttgtcattactcaaatttttctcttttatgaaattgtaaactatatgtccctttaatttgtgtaagtttgctttgcct |
316 |
Q |
| |
|
|||| |||||||||||||| |||||||| ||| ||||| | ||||| ||||||| |||||||||| ||||||| ||||||| |
|
|
| T |
68768 |
atgtccttgtcattactcatatttttctatttaatgaagtcataaac--tatgtccttttaatttgtcgaagtttgatttgcct |
68849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 316
Target Start/End: Original strand, 41363516 - 41363592
Alignment:
| Q |
240 |
tgtcattactcaaatttttctcttttatgaaattgtaaactatatgtccctttaatttgtgtaagtttgctttgcct |
316 |
Q |
| |
|
|||| ||| ||| |||||||| ||||||||| | |||| ||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
41363516 |
tgtctttagtcagatttttctattttatgaagtcataaattatatgtccttttaatttgtagaagtttgctttgcct |
41363592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University