View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5767_low_5 (Length: 405)

Name: NF5767_low_5
Description: NF5767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5767_low_5
NF5767_low_5
[»] chr1 (8 HSPs)
chr1 (18-395)||(12774750-12775127)
chr1 (82-395)||(12804511-12804824)
chr1 (81-395)||(50788818-50789132)
chr1 (74-395)||(42286930-42287251)
chr1 (81-296)||(4160289-4160504)
chr1 (82-306)||(36989242-36989466)
chr1 (82-296)||(31644058-31644272)
chr1 (82-281)||(28496106-28496305)
[»] chr8 (2 HSPs)
chr8 (81-296)||(5788722-5788937)
chr8 (100-306)||(33186637-33186843)
[»] chr2 (3 HSPs)
chr2 (82-219)||(40040778-40040915)
chr2 (82-377)||(42898129-42898424)
chr2 (81-284)||(38895856-38896059)
[»] chr4 (2 HSPs)
chr4 (82-239)||(22085506-22085663)
chr4 (80-305)||(30518146-30518371)
[»] chr7 (2 HSPs)
chr7 (80-248)||(40749350-40749518)
chr7 (100-212)||(44150818-44150930)
[»] chr3 (1 HSPs)
chr3 (97-266)||(52248370-52248539)


Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 18 - 395
Target Start/End: Complemental strand, 12775127 - 12774750
Alignment:
Q  18 aaaatcgatagcgaaaaaactcgcagtagaaaaattggaactgatttattaggtatatgtttattacctggagaagagagtgccacagtcacatctatac 117  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12775127 aaaatcgatagcgaaaaaactcgcaatagaaaaattggaactgatttattaggtatatgtttattacctggagaagagagtgccacagtcacatctatac 12775028  T
Q  118 tccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaacacttttcacacttccattttttctcaccatgctttc 217  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12775027 tccttagtaccacaagttttagaatgagctttccaatcagattgaacagcatacttcttagaacacttttcacacttccattttttctcaccatgctttc 12774928  T
Q  218 taaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacacatgttggttctggacacaaataaacctttctctttgg 317  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12774927 taaaatagtgtttcttaattccagtgaggtcaccaagagcccttgaagggtcatggtgaacacatgttggttctggacacaaataaacctttctctttgg 12774828  T
Q  318 ctctttgttactcttttgctttagcttccaaggcaaattgtgtcctcttctatgtagttgtaaattttgctccctttg 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12774827 ctctttgttactcttttgctttagcttccaaggcaaattgtgtcctcttctatgtagttgtaaattttgctccctttg 12774750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 82 - 395
Target Start/End: Original strand, 12804511 - 12804824
Alignment:
Q  82 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 181  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12804511 taccttgagaagagagtgccacagtcacatctatactccctagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 12804610  T
Q  182 acttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacaca 281  Q
    |||||||||| ||||| ||||||||||||||||||||| || |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12804611 acttttcacatttccactttttctcaccatgctttctagaaaagtgcttcttaattccagtgaggtcaccaagagcccttgaagggtcatggtgaacaca 12804710  T
Q  282 tgttggttctggacacaaataaacctttctctttggctctttgttactcttttgctttagcttccaaggcaaattgtgtcctcttctatgtagttgtaaa 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12804711 tgttggttctggacacaaataaacctttctctttggctctttgttactcttttgctttagcttccaaggcaaattgtgtcctcttctatgtagttgtaaa 12804810  T
Q  382 ttttgctccctttg 395  Q
    ||||||||||||||    
T  12804811 ttttgctccctttg 12804824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 81 - 395
Target Start/End: Original strand, 50788818 - 50789132
Alignment:
Q  81 ttacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaa 180  Q
    |||||||||||||||||||||||||||||| ||||| ||  | || ||||||||||||||||| || ||||||||||||||||||||||| ||||||||     
T  50788818 ttacctggagaagagagtgccacagtcacacctatattctctggtgccacaagtcttagaatgtgccttccaatcagattgaacagcatacttcttagag 50788917  T
Q  181 cacttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacac 280  Q
    ||||| |||||||||||||| ||||||||||| || | | | |||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||| |    
T  50788918 cacttatcacacttccatttcttctcaccatgtttgcgagagtagtgtttcttaatcccagtgaggtcaccaagtgcccttgaagggtcatgatgaacgc 50789017  T
Q  281 atgttggttctggacacaaataaacctttctctttggctctttgttactcttttgctttagcttccaaggcaaattgtgtcctcttctatgtagttgtaa 380  Q
    |||| || || ||||||| ||||||||||||||| || |||||  || |||| ||||| |||||||||||||| |||||||||||||| || || ||||     
T  50789018 atgtgggctcaggacacagataaacctttctcttaggttcttttgtagtcttctgcttaagcttccaaggcaagttgtgtcctcttctgtgaagctgtag 50789117  T
Q  381 attttgctccctttg 395  Q
    ||||||||| |||||    
T  50789118 attttgctctctttg 50789132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 74 - 395
Target Start/End: Complemental strand, 42287251 - 42286930
Alignment:
Q  74 atgtttattacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatattt 173  Q
    |||||| |||||| |||||||| |||||||| ||||||||||| ||  |||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  42287251 atgtttgttacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccagtcagattgaacagcatattt 42287152  T
Q  174 cttagaacacttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatgg 273  Q
    ||| || || |||||||| ||||| || |||||||| ||||| | | |  | || || ||||||||||| || || || | ||| ||||||||||| ||     
T  42287151 ctttgagcatttttcacatttccacttcttctcaccgtgcttacgagagaaatgctttttaattccagttagatctcctaaagctcttgaagggtcgtga 42287052  T
Q  274 tgaacacatgttggttctggacacaaataaacctttctctttggctctttgttactcttttgctttagcttccaaggcaaattgtgtcctcttctatgta 373  Q
    || || ||||| || || ||||||||||||||||||||| |||||||||||||   ||||||||||||||||||||| | |||||||||||||||||| |    
T  42287051 tggacgcatgtgggctcaggacacaaataaacctttctccttggctctttgttggacttttgctttagcttccaaggaagattgtgtcctcttctatgaa 42286952  T
Q  374 gttgtaaattttgctccctttg 395  Q
    |||| | |||||||||||||||    
T  42286951 gttgaagattttgctccctttg 42286930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 81 - 296
Target Start/End: Complemental strand, 4160504 - 4160289
Alignment:
Q  81 ttacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaa 180  Q
    |||||| |||||||| || |||||||||||  ||||||| ||||| |||||| | || ||||||||||||||||| || ||||| ||||||   ||||||    
T  4160504 ttaccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaa 4160405  T
Q  181 cacttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacac 280  Q
    || || ||||||||||| || |||||||| ||||| || ||| |||| ||||| |||||||| ||||| ||||| |||||||||||||||||||||||||    
T  4160404 catttctcacacttccacttcttctcaccgtgcttcctgaaaaagtgcttcttgattccagttaggtcaccaagtgcccttgaagggtcatggtgaacac 4160305  T
Q  281 atgttggttctggaca 296  Q
    ||||||| ||||||||    
T  4160304 atgttggctctggaca 4160289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 82 - 306
Target Start/End: Complemental strand, 36989466 - 36989242
Alignment:
Q  82 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 181  Q
    |||||||| ||||  || |||||||||||| | || ||| | ||||||||  | || |||||||||||||||||||||||||||||||||||||||||||    
T  36989466 tacctggaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaac 36989367  T
Q  182 acttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacaca 281  Q
    |||| ||||| ||||| ||||||||||||||||||||| || |||| || ||||||||||| || || ||||| || |||| ||||| |||||| |||||    
T  36989366 acttatcacatttccactttttctcaccatgctttctacaaaagtgctttttaattccagtaagatcaccaagtgctcttgcagggttatggtgtacaca 36989267  T
Q  282 tgttggttctggacacaaataaacc 306  Q
    ||  ||||| ||||| | |||||||    
T  36989266 tgaaggttcaggacaaacataaacc 36989242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 82 - 296
Target Start/End: Original strand, 31644058 - 31644272
Alignment:
Q  82 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 181  Q
    |||||||| || || || ||||| |||||| |||| ||   ||||||||| || ||||| ||||||||||||||||| |||||||||||  |||| || |    
T  31644058 tacctggaaaaaagggtaccacaatcacatttatattctcgagtaccacaggttttagagtgagctttccaatcagaatgaacagcatagatctttgagc 31644157  T
Q  182 acttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacaca 281  Q
    |||| ||||| |||||||||||||||||||| ||||||  ||| |||||||||||||| || || || ||||||||||||||||||| ||| ||||||||    
T  31644158 acttatcacatttccattttttctcaccatgttttctactataatgtttcttaattcctgtaagatctccaagagcccttgaagggttatgatgaacaca 31644257  T
Q  282 tgttggttctggaca 296  Q
    ||  || ||||||||    
T  31644258 tgaaggctctggaca 31644272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 82 - 281
Target Start/End: Original strand, 28496106 - 28496305
Alignment:
Q  82 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 181  Q
    ||||| |||||||| ||||||||||||||| | || ||  | |||||||| || || | ||||||||||||||||||||| || |||||||| || ||||    
T  28496106 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 28496205  T
Q  182 acttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacaca 281  Q
    | |||||||| ||||| || |||||||| |||||||||  | |||| || || || || |||||||| ||||| || ||||||||||||||||| |||||    
T  28496206 atttttcacatttccacttcttctcaccgtgctttctactaaagtgcttttttatacctgtgaggtcaccaagtgctcttgaagggtcatggtggacaca 28496305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 81 - 296
Target Start/End: Original strand, 5788722 - 5788937
Alignment:
Q  81 ttacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaa 180  Q
    |||||| |||||||| || ||||||||||||||||| ||  |||| |||||||| || |||||||||||||||||||||||||||||||||||||| |||    
T  5788722 ttaccttgagaagagggttccacagtcacatctatattctctagtgccacaagttttggaatgagctttccaatcagattgaacagcatatttctttgaa 5788821  T
Q  181 cacttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacac 280  Q
    ||||||||||| ||||| || |||||||||||||||||  || |||||||||| |||||||| |  || || |  || ||||| || ||||| || ||||    
T  5788822 cacttttcacatttccacttcttctcaccatgctttctggaaaagtgtttcttgattccagtcaaatcccctaatgctcttgatggatcatgatgcacac 5788921  T
Q  281 atgttggttctggaca 296  Q
    | ||||||||||||||    
T  5788922 aagttggttctggaca 5788937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 100 - 306
Target Start/End: Complemental strand, 33186843 - 33186637
Alignment:
Q  100 ccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaacacttttcacacttccatt 199  Q
    ||||| |||||| |||||||  ||| |||||||   ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |    
T  33186843 ccacaatcacatttatactctctagaaccacaaactttagagtgagctttccaatcagattgaacagcatatttcttagaacatttctcacatttccact 33186744  T
Q  200 ttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacacatgttggttctggacacaa 299  Q
    ||||||||||||| |||||| || |||| || || || ||||| |  || || | ||| || ||||| ||||| |||||||| || ||||| ||||| |     
T  33186743 ttttctcaccatgttttctacaaaagtgcttttttatcccagttaaatcacctaaagctctagaaggatcatgatgaacacaagtaggttcaggacaaac 33186644  T
Q  300 ataaacc 306  Q
    |||||||    
T  33186643 ataaacc 33186637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 82 - 219
Target Start/End: Complemental strand, 40040915 - 40040778
Alignment:
Q  82 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 181  Q
    ||||||||||| || |||||||| |||||||| ||||| ||||| |||||| |||||  |||||| ||||||||||||||||| ||||||||||||||||    
T  40040915 tacctggagaatagtgtgccacaatcacatctgtactctttagtgccacaaatcttactatgagccttccaatcagattgaactgcatatttcttagaac 40040816  T
Q  182 acttttcacacttccattttttctcaccatgctttcta 219  Q
    |||| ||||||||||| || |||||||| |||||||||    
T  40040815 acttatcacacttccacttcttctcaccgtgctttcta 40040778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 82 - 377
Target Start/End: Complemental strand, 42898424 - 42898129
Alignment:
Q  82 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 181  Q
    ||||| |||||||| || |||||||||||||| || ||  | || ||||| || || || ||||||||||| || |||||||| ||||| |||||||| |    
T  42898424 taccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagc 42898325  T
Q  182 acttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacaca 281  Q
    |||| ||||| ||||| || |||||||| ||||||||  |  |||| ||||| || ||||| ||||| || |  || ||||| ||||||||||| |||||    
T  42898324 acttgtcacatttccacttcttctcaccgtgctttctgcagaagtgcttcttgataccagttaggtcccccaaggctcttgatgggtcatggtgcacaca 42898225  T
Q  282 tgttggttctggacacaaataaacctttctctttggctctttgttactcttttgctttagcttccaaggcaaattgtgtcctcttctatgtagttg 377  Q
     |||||||||||||||| |||||| ||  || ||  ||| ||| |  |  ||||||| | |||||| |||||||||||||||||| |||| |||||    
T  42898224 agttggttctggacacacataaactttcttccttatctcattgcttgttctttgcttcaacttccatggcaaattgtgtcctcttttatgaagttg 42898129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 81 - 284
Target Start/End: Original strand, 38895856 - 38896059
Alignment:
Q  81 ttacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaa 180  Q
    |||||| || |||| ||||||||| |||||| | || ||  |||||||||||||||| || || ||||||||||| ||||||||||||||    || ||     
T  38895856 ttaccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgag 38895955  T
Q  181 cacttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacac 280  Q
    ||||| ||||||||||| || |||||||| || || ||| || |||| ||||| || ||||| |  || || | |||||||||||| | ||  |||||||    
T  38895956 cacttctcacacttccacttcttctcaccgtgtttcctacaaaagtgcttctttatcccagttaaatctcccaaagcccttgaaggatgattatgaacac 38896055  T
Q  281 atgt 284  Q
    ||||    
T  38896056 atgt 38896059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 82 - 239
Target Start/End: Original strand, 22085506 - 22085663
Alignment:
Q  82 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 181  Q
    ||||||||||| |  |||||||| |||||| | |||||  |||| |||||| ||||   |||||||||||||||||||||||| ||||||||||| ||||    
T  22085506 tacctggagaaaattgtgccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttggaac 22085605  T
Q  182 acttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattcc 239  Q
    |||||||||||||||| || ||||||||||| ||||||  ||| |||||||| |||||    
T  22085606 acttttcacacttccacttcttctcaccatgttttctactataatgtttctttattcc 22085663  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 80 - 305
Target Start/End: Original strand, 30518146 - 30518371
Alignment:
Q  80 attacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttaga 179  Q
    ||||||| || |||| ||| |||||||||||| | || ||  |||||||||| || || || |||||||||||||| || |||||||||||    || ||    
T  30518146 attaccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttga 30518245  T
Q  180 acacttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaaca 279  Q
     ||||| ||||||||||| || || ||||||||||||||| || |||| || || || ||||| | ||| ||||| ||||||||||| |||||||| |||    
T  30518246 gcacttctcacacttccacttcttttcaccatgctttctacaaaagtgcttttttatcccagttaagtcaccaagtgcccttgaaggatcatggtggaca 30518345  T
Q  280 catgttggttctggacacaaataaac 305  Q
    || |||   |||||||||| ||||||    
T  30518346 caagttttctctggacacacataaac 30518371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 80 - 248
Target Start/End: Complemental strand, 40749518 - 40749350
Alignment:
Q  80 attacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttaga 179  Q
    ||||||| |||||||| || ||||| |||||  |||| ||  ||||||||||||| ||||  |||||||||||||||||||| || ||||||||||| ||    
T  40749518 attaccttgagaagagtgtaccacaatcacacttatattctctagtaccacaagttttagtgtgagctttccaatcagattggactgcatatttcttgga 40749419  T
Q  180 acacttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtc 248  Q
    |||||| |||||||||||||| ||||| ||||| ||||||  | | |||||||| ||||| ||||||||    
T  40749418 acacttatcacacttccatttcttctcgccatgttttctactaaaatgtttctttattccggtgaggtc 40749350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 100 - 212
Target Start/End: Original strand, 44150818 - 44150930
Alignment:
Q  100 ccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaacacttttcacacttccatt 199  Q
    ||||| |||||| | || ||| ||||||||||||| ||    ||||| |||||||| ||||||||||||||| | ||||| ||||| ||||| |||||||    
T  44150818 ccacaatcacatttgtattccctagtaccacaagttttctggtgagccttccaatctgattgaacagcatatcttttagagcacttgtcacatttccatt 44150917  T
Q  200 ttttctcaccatg 212  Q
    | |||||||||||    
T  44150918 tcttctcaccatg 44150930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 266
Target Start/End: Original strand, 52248370 - 52248539
Alignment:
Q  97 gtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaacacttttcacacttcc 196  Q
    |||||||| |||||| |||||||  |||| |||||  ||||   |||| ||||| ||||| |||   |||| ||||| ||||||||   |||||| ||||    
T  52248370 gtgccacaatcacatttatactctctagttccacagctcttcatatgaactttcaaatcacatttcgcagcgtattttttagaacaacgttcacatttcc 52248469  T
Q  197 attttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagg 266  Q
    |||| |||||||||||||||||| || |||| || || | ||| |||||||| || || || ||||||||    
T  52248470 atttcttctcaccatgctttctacaaaagtgctttttcactcctgtgaggtcaccgagtgctcttgaagg 52248539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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