View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5768-Insertion-1 (Length: 946)
Name: NF5768-Insertion-1
Description: NF5768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5768-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 491; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 8 - 578
Target Start/End: Complemental strand, 12095967 - 12095399
Alignment:
| Q |
8 |
ttaatttcagtatcttcgaggctgctgggaaccagttgaccggtgatgcgtctttcttgttcggggaaagtaagactgagttggctcatctggacttgtc |
107 |
Q |
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| T |
12095967 |
ttaatttcagtattttcgaggctgctgggaaccagttgaccggtgatgcgtctttcttgttcggggaaagtaagactgagttggctcatctggacttgtc |
12095868 |
T |
|
| Q |
108 |
gcaaaacaagttgtcgttcgacctctctaaggtggtaatgccagtgggacaactggactcgaatttgctggtcttacggttggaaaataacatgatatac |
207 |
Q |
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|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
12095867 |
gcgaaacaagttgtcattcgacctctctaaggtggtaatgccagtgggacaactggaatcgaatttgcttgtcttacggttggaaaataacatgatatac |
12095768 |
T |
|
| Q |
208 |
ggaaagttgccagcttggttaggccaagcgtcattgttgtacgacttcaatgtgagctacaaccagctttccggtcctataccgacagttggagggaagt |
307 |
Q |
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| T |
12095767 |
ggaaagttgccagcttggttaggccaagcgtcattgttgtacgacttcaatgtgagctacaaccagcttttcggtcctataccgacagttggagggaagt |
12095668 |
T |
|
| Q |
308 |
tgcaagagtttgatccatcgtcattttcgcataataagggcttgtgtggttctcctttgcctccttgtaagcagggccgtcccggctccatagagctctt |
407 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12095667 |
tgcaagagtttgatccatcgtcgttttcgcataataagggcttgtgtggttctcctttgcctccttgtaagcagggccgtcccggctccatagagctctt |
12095568 |
T |
|
| Q |
408 |
agcgcttgctcaagaacgggcctccttgtaagtgagtaattagtactcactcggttacacatttatcggcctcatataacatggggcatttataagaaaa |
507 |
Q |
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|| |||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12095567 |
cgcacttgctcaagaaagggcctccttgtaagtga--aattagtactcaatcggttacacatttatcggcctcatataacatggggcatttataagaaaa |
12095470 |
T |
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| Q |
508 |
tgtgttaaaataatagtaataatgttgggggtgtggaactcnnnnnnngagtaagggtagtatgagattct |
578 |
Q |
| |
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| T |
12095469 |
tgtgttaaaataatagtaataatgttgggggtgtggaactcttttttagagtaagggtggtatgagattct |
12095399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 8 - 378
Target Start/End: Complemental strand, 12079327 - 12078957
Alignment:
| Q |
8 |
ttaatttcagtatcttcgaggctgctgggaaccagttgaccggtgatgcgtctttcttgttcggggaaagtaagactgagttggctcatctggacttgtc |
107 |
Q |
| |
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||||||||||||| ||||||||||||||||||| ||||||||||||||| || |||||||||||| || |||||||||||||||||| ||||||||||| |
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| T |
12079327 |
ttaatttcagtattttcgaggctgctgggaaccggttgaccggtgatgcatcgttcttgttcgggaaagataagactgagttggctcacctggacttgtc |
12079228 |
T |
|
| Q |
108 |
gcaaaacaagttgtcgttcgacctctctaaggtggtaatgccagtgggacaactggactcgaatttgctggtcttacggttggaaaataacatgatatac |
207 |
Q |
| |
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|| ||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||| |
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| T |
12079227 |
gcgaaacaagctgtcgtttgacctcggtaaggtggtaatgccagtgggacaactggactcgaatttgctggtcttgcggttggaaaataaccttatatat |
12079128 |
T |
|
| Q |
208 |
ggaaagttgccagcttggttaggccaagcgtcattgttgtacgacttcaatgtgagctacaaccagctttccggtcctataccgacagttggagggaagt |
307 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||| ||||||||||||||||| |||||||||| |
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| T |
12079127 |
ggaaagttgccagcttggttaggccaagcgtcattgttgtatgacttcaatgtgagcaacaaccaactttgtggtcctataccgacagtcggagggaagt |
12079028 |
T |
|
| Q |
308 |
tgcaagagtttgatccatcgtcattttcgcataataagggcttgtgtggttctcctttgcctccttgtaag |
378 |
Q |
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|||||| ||||||||||||||| ||||||||||||||| | |||||||||||||||||||| ||||||||| |
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| T |
12079027 |
tgcaagggtttgatccatcgtcgttttcgcataataagtgtttgtgtggttctcctttgcccccttgtaag |
12078957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 612 - 834
Target Start/End: Complemental strand, 12095326 - 12095102
Alignment:
| Q |
612 |
tagcgatgagcaaaatatgaatgacatatccatcagcaaaagaaataacacatgttcagatggcaatgaaaataacatttcttgctcaaa--taccttaa |
709 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
12095326 |
tagcgatgagcaaaatatgaatgacatatccatcagcaaaagaaataacacatgttctgatggcaatgaaaataacatttcttgctcaaaaataccttaa |
12095227 |
T |
|
| Q |
710 |
ttgcaacaaattatcagctgcataatacaacaaaatacaccactttctgttatactcactcaataacagaaagtatattcaataaattttataacgtcga |
809 |
Q |
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| T |
12095226 |
ttgcaacaaattatcagctgcataatacaacaaaatacaccactttctgttatactcattcaataacagaaagtatattcaataaattttataacgtcga |
12095127 |
T |
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| Q |
810 |
aaaagagtagagaaaggcaggatca |
834 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
12095126 |
aaaagagtagagaaaggcaggatca |
12095102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 431 - 518
Target Start/End: Complemental strand, 12078965 - 12078878
Alignment:
| Q |
431 |
ccttgtaagtgagtaattagtactcactcggttacacatttatcggcctcatataacatggggcatttataagaaaatgtgttaaaat |
518 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||| ||||||| | ||||||| ||||| ||||||||||||||||||| |
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| T |
12078965 |
ccttgtaagtgagtaattagtactctctcggttacacatttatcagcctcatttgacatgggtcatttgtaagaaaatgtgttaaaat |
12078878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 828 - 930
Target Start/End: Complemental strand, 12106792 - 12106695
Alignment:
| Q |
828 |
aggatcataacataatacttagttgcattatacgacaggaaccagaaataaaataaggtaggtactaagattttagttaaagaaaggaaccagtgcgaaa |
927 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||| || || |||||||||| ||||||||| |||||||||||||| |||| |
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| T |
12106792 |
aggatcataacataatacttcgttgcattatacgacaggaaccagaaacaa-----ggcaggtactaaggttttagttaccgaaaggaaccagtgagaaa |
12106698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 573 - 715
Target Start/End: Complemental strand, 12078788 - 12078656
Alignment:
| Q |
573 |
gattctctttcaccaatttcatatatccaaactgaagattagcgatgagcaaaatatgaatgacatatccatcagcaaaagaaataacacatgttcagat |
672 |
Q |
| |
|
||||||||||||| ||||||| |||| ||||||||||| || ||||||| | || |||||||||||||||||||||||||| ||| ||| |
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| T |
12078788 |
gattctctttcactaatttcaggtatcgaaactgaagatgagggatgagccacatttgaatgacatatccatcagcaaaagagata----------agaa |
12078699 |
T |
|
| Q |
673 |
ggcaatgaaaataacatttcttgctcaaataccttaattgcaa |
715 |
Q |
| |
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|||||||||||| |||||||||| ||||||||||||| ||||| |
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| T |
12078698 |
ggcaatgaaaatgacatttcttgatcaaataccttaactgcaa |
12078656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 257 - 328
Target Start/End: Original strand, 1249176 - 1249247
Alignment:
| Q |
257 |
atgtgagctacaaccagctttccggtcctataccgacagttggagggaagttgcaagagtttgatccatcgt |
328 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||| | | ||||||||||||||||| ||||||||| |||| |
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| T |
1249176 |
atgtgagccacaaccagctttgtggtcctataccaaaggatggagggaagttgcaagggtttgatccgtcgt |
1249247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 7e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 724 - 812
Target Start/End: Complemental strand, 32143386 - 32143298
Alignment:
| Q |
724 |
cagctgcataatacaacaaaatacaccactttctgttatactcactcaataacagaaagtatattcaataaattttataacgtcgaaaa |
812 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
32143386 |
cagctgcataatacaacaaaatacaccactttctgttatactcatccaataacagaaagtatattcaataaaatttataccgtcgaaaa |
32143298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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