View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5768-Insertion-5 (Length: 130)
Name: NF5768-Insertion-5
Description: NF5768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5768-Insertion-5 |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 8e-62; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 8e-62
Query Start/End: Original strand, 6 - 129
Target Start/End: Complemental strand, 16977819 - 16977696
Alignment:
| Q |
6 |
cacaaagaatgaggagatgaaggataaaagtccttatgtaaacaatggtgaaatggagcattcagattatggtgaggagatgagcgataaaaatccttct |
105 |
Q |
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| T |
16977819 |
cacaaagaatgaggagatgaaggataaaagtccttctgtaaacaatggtgaaatggagcattcagattatggtgaggagatgagcgataaaaatccttct |
16977720 |
T |
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| Q |
106 |
gtaaacaatgatgaagttgagcat |
129 |
Q |
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| T |
16977719 |
gtaaacaatgatgaagttgagcat |
16977696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 10601871 - 10601936
Alignment:
| Q |
13 |
aatgaggagatgaaggataaaagtccttatgtaaacaatggtgaaatggagcattcagattatggt |
78 |
Q |
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| T |
10601871 |
aatgaggaggtgaaggataaaagtccttctataaagaatgatgaagtggagcattcagattatggt |
10601936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 16977747 - 16977684
Alignment:
| Q |
15 |
tgaggagatgaaggataaaagtccttatgtaaacaatggtgaaatggagcattcagattatggt |
78 |
Q |
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| T |
16977747 |
tgaggagatgagcgataaaaatccttctgtaaacaatgatgaagttgagcattcagattatggt |
16977684 |
T |
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