View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5768_high_1 (Length: 699)

Name: NF5768_high_1
Description: NF5768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5768_high_1
NF5768_high_1
[»] chr4 (30 HSPs)
chr4 (534-685)||(8567284-8567435)
chr4 (18-125)||(8591306-8591409)
chr4 (18-114)||(8567470-8567566)
chr4 (18-114)||(8586213-8586309)
chr4 (534-583)||(8586129-8586178)
chr4 (301-373)||(34246790-34246862)
chr4 (315-373)||(17609152-17609210)
chr4 (312-373)||(23949711-23949772)
chr4 (301-373)||(54315088-54315160)
chr4 (310-373)||(13252331-13252394)
chr4 (310-373)||(46674904-46674967)
chr4 (299-372)||(49651024-49651097)
chr4 (293-373)||(14965364-14965444)
chr4 (316-372)||(41855038-41855094)
chr4 (310-373)||(16032334-16032397)
chr4 (310-373)||(20180411-20180474)
chr4 (317-364)||(38052488-38052535)
chr4 (299-373)||(388076-388150)
chr4 (290-372)||(10754438-10754520)
chr4 (290-372)||(10968207-10968289)
chr4 (310-372)||(29832241-29832303)
chr4 (310-372)||(35340642-35340704)
chr4 (310-372)||(37912491-37912553)
chr4 (583-621)||(40422900-40422938)
chr4 (315-373)||(43050214-43050272)
chr4 (295-373)||(54270798-54270876)
chr4 (315-373)||(56299734-56299792)
chr4 (299-372)||(30035473-30035546)
chr4 (316-372)||(38615232-38615288)
chr4 (301-373)||(41414241-41414313)
[»] scaffold1450 (2 HSPs)
scaffold1450 (18-114)||(85-181)
scaffold1450 (534-583)||(1-50)
[»] chr8 (23 HSPs)
chr8 (310-373)||(26746872-26746935)
chr8 (301-377)||(8378259-8378335)
chr8 (300-377)||(37954340-37954417)
chr8 (316-373)||(29440914-29440971)
chr8 (295-373)||(7884463-7884541)
chr8 (281-377)||(16861919-16862015)
chr8 (310-373)||(4393932-4393995)
chr8 (287-377)||(6806693-6806784)
chr8 (300-363)||(28071987-28072050)
chr8 (310-373)||(31873594-31873657)
chr8 (310-373)||(39645883-39645946)
chr8 (310-373)||(43413992-43414055)
chr8 (301-371)||(6247650-6247720)
chr8 (315-373)||(9792242-9792300)
chr8 (294-372)||(15286535-15286613)
chr8 (294-372)||(15466904-15466982)
chr8 (295-373)||(16421889-16421967)
chr8 (331-377)||(17911022-17911068)
chr8 (331-373)||(35455469-35455511)
chr8 (315-372)||(3562451-3562508)
chr8 (315-372)||(3598817-3598874)
chr8 (312-373)||(44012256-44012317)
chr8 (301-373)||(34865659-34865731)
[»] chr2 (22 HSPs)
chr2 (310-373)||(36443557-36443620)
chr2 (300-377)||(9110680-9110757)
chr2 (301-373)||(22050642-22050714)
chr2 (295-373)||(11216621-11216699)
chr2 (310-373)||(39293390-39293453)
chr2 (310-373)||(43446577-43446640)
chr2 (331-373)||(13196427-13196469)
chr2 (295-377)||(20925868-20925950)
chr2 (295-373)||(44987744-44987822)
chr2 (306-370)||(33713592-33713656)
chr2 (310-373)||(8444172-8444235)
chr2 (281-372)||(10197994-10198085)
chr2 (310-373)||(18450104-18450167)
chr2 (310-373)||(40483570-40483633)
chr2 (310-373)||(41186826-41186889)
chr2 (306-373)||(44710008-44710075)
chr2 (295-373)||(15848654-15848732)
chr2 (331-373)||(30803502-30803544)
chr2 (300-373)||(40346414-40346487)
chr2 (310-374)||(13197041-13197105)
chr2 (325-373)||(29360807-29360855)
chr2 (295-363)||(36173985-36174053)
[»] chr7 (21 HSPs)
chr7 (301-377)||(8670405-8670481)
chr7 (315-377)||(29409375-29409437)
chr7 (310-373)||(28536935-28536998)
chr7 (310-373)||(42121945-42122008)
chr7 (306-372)||(3945171-3945237)
chr7 (310-372)||(39938641-39938703)
chr7 (310-364)||(47193665-47193719)
chr7 (299-372)||(584551-584624)
chr7 (293-373)||(36669702-36669782)
chr7 (310-377)||(2849941-2850008)
chr7 (310-373)||(10439373-10439435)
chr7 (310-373)||(10453083-10453145)
chr7 (310-373)||(23726550-23726613)
chr7 (310-373)||(24924346-24924409)
chr7 (310-373)||(40704433-40704495)
chr7 (310-372)||(18975983-18976045)
chr7 (315-377)||(28234311-28234373)
chr7 (316-373)||(37115782-37115839)
chr7 (316-373)||(43884300-43884357)
chr7 (293-373)||(33616405-33616485)
chr7 (300-372)||(46342768-46342840)
[»] chr1 (23 HSPs)
chr1 (310-373)||(8462455-8462518)
chr1 (316-373)||(41529159-41529216)
chr1 (310-373)||(6920904-6920967)
chr1 (310-373)||(34347315-34347378)
chr1 (280-374)||(38606151-38606246)
chr1 (299-373)||(39640300-39640375)
chr1 (310-373)||(51560790-51560853)
chr1 (299-373)||(83081-83155)
chr1 (315-373)||(41457878-41457936)
chr1 (316-373)||(8768623-8768680)
chr1 (312-373)||(40052321-40052382)
chr1 (293-372)||(8878789-8878868)
chr1 (310-373)||(13985444-13985507)
chr1 (281-372)||(25279464-25279555)
chr1 (310-373)||(34967505-34967568)
chr1 (310-373)||(52177827-52177890)
chr1 (315-377)||(6049746-6049807)
chr1 (310-372)||(8307830-8307892)
chr1 (311-373)||(42334432-42334494)
chr1 (316-373)||(20793387-20793444)
chr1 (300-373)||(26551646-26551719)
chr1 (306-370)||(6260503-6260567)
chr1 (300-372)||(46762150-46762222)
[»] chr5 (17 HSPs)
chr5 (310-372)||(5288890-5288952)
chr5 (316-373)||(13090042-13090099)
chr5 (293-373)||(36487310-36487390)
chr5 (293-373)||(40555096-40555176)
chr5 (315-373)||(15268448-15268506)
chr5 (310-372)||(19282617-19282679)
chr5 (315-373)||(43403408-43403466)
chr5 (300-372)||(23991745-23991817)
chr5 (314-373)||(2606595-2606654)
chr5 (315-374)||(8883247-8883306)
chr5 (310-373)||(9246069-9246132)
chr5 (310-373)||(10164720-10164783)
chr5 (310-373)||(14341796-14341859)
chr5 (301-372)||(26256334-26256405)
chr5 (310-372)||(35288159-35288221)
chr5 (301-373)||(6334986-6335058)
chr5 (301-373)||(40275355-40275427)
[»] chr3 (23 HSPs)
chr3 (301-373)||(10659235-10659307)
chr3 (300-372)||(52262258-52262330)
chr3 (310-373)||(4756353-4756416)
chr3 (310-373)||(9794516-9794579)
chr3 (310-373)||(52060446-52060509)
chr3 (310-373)||(54747882-54747945)
chr3 (316-373)||(54677664-54677721)
chr3 (310-377)||(2510196-2510263)
chr3 (310-377)||(9508675-9508742)
chr3 (310-377)||(9516650-9516717)
chr3 (310-373)||(32100256-32100319)
chr3 (322-373)||(48574817-48574868)
chr3 (310-372)||(240649-240711)
chr3 (315-373)||(42662633-42662691)
chr3 (316-373)||(3835300-3835357)
chr3 (316-373)||(42939750-42939807)
chr3 (316-369)||(50106232-50106285)
chr3 (316-372)||(1672873-1672929)
chr3 (310-346)||(3442824-3442860)
chr3 (293-373)||(8724306-8724386)
chr3 (293-373)||(9076193-9076273)
chr3 (325-377)||(39507790-39507842)
chr3 (301-373)||(43190664-43190736)
[»] chr6 (12 HSPs)
chr6 (310-373)||(1114488-1114551)
chr6 (310-373)||(32588720-32588783)
chr6 (310-373)||(10629491-10629554)
chr6 (310-373)||(13631237-13631300)
chr6 (310-377)||(17441700-17441767)
chr6 (334-373)||(21047423-21047462)
chr6 (310-372)||(6833790-6833852)
chr6 (314-372)||(11213560-11213618)
chr6 (310-372)||(16465860-16465922)
chr6 (331-373)||(34219084-34219126)
chr6 (325-373)||(9225586-9225634)
chr6 (312-377)||(33841287-33841348)
[»] scaffold0006 (1 HSPs)
scaffold0006 (298-372)||(188764-188838)
[»] scaffold0768 (1 HSPs)
scaffold0768 (310-372)||(6076-6138)
[»] scaffold0154 (1 HSPs)
scaffold0154 (301-377)||(4150-4226)


Alignment Details
Target: chr4 (Bit Score: 148; Significance: 1e-77; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 534 - 685
Target Start/End: Complemental strand, 8567435 - 8567284
Alignment:
Q  534 ttgattttagtaaatatcaaatgtcaagtttgaaatttttgaagaatgattgggagtttagaagggaggagaagaaatggctttgggggacttaaatatt 633  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8567435 ttgattttagtaaatatctaatgtcaagtttgaaatttttgaagaatgattgggagtttagaagggaggagaagaaatggctttgggggacttaaatatt 8567336  T
Q  634 ttggtggacacaatttcattgtggactgaagctatcacaataaccctttgat 685  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8567335 ttggtggacacaatttcattgtggactgaagctatcacaataaccctttgat 8567284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 8591409 - 8591306
Alignment:
Q  18 atattgaagcttcaactaatgacacttttacactagtatgtcaacaattaaatttctccaacattaattcttaatctaccactgctatcataagaaaagt 117  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||   ||| |||| |||||||||||    
T  8591409 atattgaagcttcaactaatgacacttttacactagtaagtctacaattaaatttctccaaca-taattcttaatct---acttctattataagaaaagt 8591314  T
Q  118 gattacta 125  Q
    ||||||||    
T  8591313 gattacta 8591306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 8567566 - 8567470
Alignment:
Q  18 atattgaagcttcaactaatgacacttttacactagtatgtcaacaattaaatttctccaacattaattcttaatcta-ccactgctatcataagaaa 114  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||| | |||||||||||||||||    
T  8567566 atattgaagcttcaactaatgacatttttacactagtatgtctacaattaaatttctccaaca-taattctttatctatctactgctatcataagaaa 8567470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 8586309 - 8586213
Alignment:
Q  18 atattgaagcttcaactaatgacacttttacactagtatgtcaacaattaaatttctccaacattaattcttaatcta-ccactgctatcataagaaa 114  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||| | |||||||||||||||||    
T  8586309 atattgaagcttcaactaatgacatttttacactagtatgtctacaattaaatttctccaaca-taattctttatctatctactgctatcataagaaa 8586213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 534 - 583
Target Start/End: Complemental strand, 8586178 - 8586129
Alignment:
Q  534 ttgattttagtaaatatcaaatgtcaagtttgaaatttttgaagaatgat 583  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8586178 ttgattttagtaaatatctaatgtcaagtttgaaatttttgaagaatgat 8586129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 301 - 373
Target Start/End: Original strand, 34246790 - 34246862
Alignment:
Q  301 aaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||| ||| |||||||||||||| ||||| ||||||||| |||||| ||||||| ||||||||||||| ||||    
T  34246790 aaaaaaaattgtctcaaattatatgtcgctttacaataccaatgaaacattaatgttattttttctataatat 34246862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 315 - 373
Target Start/End: Complemental strand, 17609210 - 17609152
Alignment:
Q  315 caaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||||||| ||||| ||||||||| |||||| ||||||| ||||||||||||||||||    
T  17609210 caaattatatgtcgctttacaataccaatgaaacattaatgttattttttctattatat 17609152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 312 - 373
Target Start/End: Complemental strand, 23949772 - 23949711
Alignment:
Q  312 tctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||||||||| ||||| |||||||| ||||| | ||||||| ||||||||||||||||||    
T  23949772 tctcaaattatatgtcgctttacaatataaatgcaacattaatgttattttttctattatat 23949711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 301 - 373
Target Start/End: Original strand, 54315088 - 54315160
Alignment:
Q  301 aaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||| ||| ||||||||||| || ||||||||||||||| |||||| ||||||| ||| |||| |||||||||    
T  54315088 aaaaaaaattgtctcaaattgtatgtcgcattacaataccaatgaatcattaatgttacttttcctattatat 54315160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 310 - 373
Target Start/End: Complemental strand, 13252394 - 13252331
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||||||||||||||||| ||||||||| ||||||  |||||| ||| |||| |||||||||    
T  13252394 tgtctcaaattatacgtcgctttacaataccaatgaaatattaatgttacttttcctattatat 13252331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 310 - 373
Target Start/End: Original strand, 46674904 - 46674967
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||||||||| || ||| | ||||||||| |||||| |||||||||||||||| |||||||||    
T  46674904 tgtctcaaattttatgtcactttacaataccaatgaaacattaatattatttttcctattatat 46674967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 299 - 372
Target Start/End: Complemental strand, 49651097 - 49651024
Alignment:
Q  299 ggaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattata 372  Q
    |||||| ||| |||||||||||||  ||||| ||||||||| |||| | ||||||| |||||||| ||||||||    
T  49651097 ggaaaaaaaattgtctcaaattatttgtcgctttacaataccaatgcaacattaatgttatttttcctattata 49651024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 293 - 373
Target Start/End: Original strand, 14965364 - 14965444
Alignment:
Q  293 gttttgggaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||||| |||| ||  |||| |||||| || ||||| || |||||| |||||||||||||| |||||||| |||||||||    
T  14965364 gttttggaaaaaaaatttgtcccaaattgtatgtcgctttgcaatactaatgaagcattaatgttatttttcctattatat 14965444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 316 - 372
Target Start/End: Original strand, 41855038 - 41855094
Alignment:
Q  316 aaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattata 372  Q
    |||||||| ||||  |||||||| ||||||| ||||||| |||||||||||||||||    
T  41855038 aaattataagtcgttttacaatataaatgaaacattaatgttattttttctattata 41855094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 373
Target Start/End: Original strand, 16032334 - 16032397
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||||||||||| ||||| ||||||||| ||||||  |||||| ||| |||| |||||||||    
T  16032334 tgtctcaaattatatgtcgctttacaataccaatgaaatattaatgttacttttcctattatat 16032397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 373
Target Start/End: Original strand, 20180411 - 20180474
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||| |||||| |||||||| ||||||||| ||||||  |||||| ||| ||||||||||||||    
T  20180411 tgtcccaaattgtacgtcgctttacaataccaatgaaaaattaatgttactttttctattatat 20180474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 364
Target Start/End: Complemental strand, 38052535 - 38052488
Alignment:
Q  317 aattatacgtcgcattacaatacaaatgaagcattaatattatttttt 364  Q
    ||||||| ||||  |||||||||||||||||||||||| |||||||||    
T  38052535 aattataagtcgttttacaatacaaatgaagcattaatgttatttttt 38052488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 299 - 373
Target Start/End: Original strand, 388076 - 388150
Alignment:
Q  299 ggaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||| ||| ||||||||||| || ||||| ||||||||| |||||| ||||| | ||| |||| |||||||||    
T  388076 ggaaaaaaaattgtctcaaattgtatgtcgctttacaataccaatgaatcattagtgttacttttcctattatat 388150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 290 - 372
Target Start/End: Original strand, 10754438 - 10754520
Alignment:
Q  290 gttgttttgggaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattata 372  Q
    |||||||||| |||| ||   ||||||||||||| ||||  ||| ||||| ||||||| |||||| ||| |||||||||||||    
T  10754438 gttgttttggaaaaaaaattcgtctcaaattataagtcggtttaaaataccaatgaagaattaatgttactttttctattata 10754520  T

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Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 290 - 372
Target Start/End: Original strand, 10968207 - 10968289
Alignment:
Q  290 gttgttttgggaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattata 372  Q
    |||||||||| |||| ||   ||||||||||||| ||||  ||| ||||| ||||||| |||||| ||| |||||||||||||    
T  10968207 gttgttttggaaaaaaaattcgtctcaaattataagtcggtttaaaataccaatgaagaattaatgttactttttctattata 10968289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 310 - 372
Target Start/End: Complemental strand, 29832303 - 29832241
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattata 372  Q
    |||| ||||||||| ||||| ||||||||| |||| | ||||||| ||| |||||||||||||    
T  29832303 tgtcccaaattatatgtcgctttacaataccaatgtaacattaatgttactttttctattata 29832241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 310 - 372
Target Start/End: Original strand, 35340642 - 35340704
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattata 372  Q
    ||||| ||||||||  |||  ||||||||| |||||| |||||||| ||||||||||||||||    
T  35340642 tgtcttaaattataaatcgttttacaataccaatgaaacattaataatattttttctattata 35340704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 310 - 372
Target Start/End: Original strand, 37912491 - 37912553
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattata 372  Q
    |||||||||||||| ||||| ||||||||| |||| | ||||||| ||| |||| ||||||||    
T  37912491 tgtctcaaattatatgtcgctttacaataccaatgcaacattaatgttacttttcctattata 37912553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 583 - 621
Target Start/End: Original strand, 40422900 - 40422938
Alignment:
Q  583 ttgggagtttagaagggaggagaagaaatggctttgggg 621  Q
    |||||||||||||||||| ||||||||| ||||||||||    
T  40422900 ttgggagtttagaagggatgagaagaaaaggctttgggg 40422938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 315 - 373
Target Start/End: Original strand, 43050214 - 43050272
Alignment:
Q  315 caaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||||||| ||||| ||||||||| ||||||  |||||| ||| ||||||||||||||    
T  43050214 caaattatatgtcgctttacaataccaatgaaatattaatgttactttttctattatat 43050272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 295 - 373
Target Start/End: Original strand, 54270798 - 54270876
Alignment:
Q  295 tttgggaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||| |||| ||| ||||  ||||||||  |||| ||||||||| ||||||  |||||| ||||||||||||||||||    
T  54270798 tttggaaaaaaaaattgtcctaaattatatttcgctttacaataccaatgaaatattaatgttattttttctattatat 54270876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 315 - 373
Target Start/End: Original strand, 56299734 - 56299792
Alignment:
Q  315 caaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||||||| ||||  ||||||||||||||||  |||||| ||| ||||||||||||||    
T  56299734 caaattatatgtcgttttacaatacaaatgaaaaattaatgttactttttctattatat 56299792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 372
Target Start/End: Complemental strand, 30035546 - 30035473
Alignment:
Q  299 ggaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattata 372  Q
    |||||| ||| |||||||||||||| ||  | ||||||||| |||| | ||||||||||| ||| |||||||||    
T  30035546 ggaaaaaaaattgtctcaaattatatgttactttacaataccaatgcaacattaatattaatttctctattata 30035473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 316 - 372
Target Start/End: Complemental strand, 38615288 - 38615232
Alignment:
Q  316 aaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattata 372  Q
    |||||||| ||||| |||||||||||||| | ||||||| ||| |||| ||||||||    
T  38615288 aaattatatgtcgctttacaatacaaatgtaacattaatgttacttttcctattata 38615232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 301 - 373
Target Start/End: Complemental strand, 41414313 - 41414241
Alignment:
Q  301 aaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||| ||| |||||||||||||| ||||  ||||||||| ||||||  |||||| ||| |||| |||||||||    
T  41414313 aaaaaaaattgtctcaaattatatgtcgttttacaataccaatgaaatattaatgttacttttcctattatat 41414241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1450 (Bit Score: 66; Significance: 8e-29; HSPs: 2)
Name: scaffold1450
Description:

Target: scaffold1450; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 181 - 85
Alignment:
Q  18 atattgaagcttcaactaatgacacttttacactagtatgtcaacaattaaatttctccaacattaattcttaatcta-ccactgctatcataagaaa 114  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||| | |||||||||||||||||    
T  181 atattgaagcttcaactaatgacatttttacactagtatgtctacaattaaatttctccaaca-taattctttatctatctactgctatcataagaaa 85  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1450; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 534 - 583
Target Start/End: Complemental strand, 50 - 1
Alignment:
Q  534 ttgattttagtaaatatcaaatgtcaagtttgaaatttttgaagaatgat 583  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  50 ttgattttagtaaatatctaatgtcaagtttgaaatttttgaagaatgat 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 310 - 373
Target Start/End: Original strand, 26746872 - 26746935
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||||||||||| ||||| ||||||||| |||||| ||||||||||||||||||||||||||    
T  26746872 tgtctcaaattatatgtcgctttacaataccaatgaaacattaatattattttttctattatat 26746935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 301 - 377
Target Start/End: Complemental strand, 8378335 - 8378259
Alignment:
Q  301 aaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatattctt 377  Q
    |||| ||| |||||||||||||||| ||| ||||||||| |||||| ||||||| |||||||| |||||||||||||    
T  8378335 aaaaaaaattgtctcaaattatacgccgctttacaataccaatgaaacattaatgttatttttcctattatattctt 8378259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 300 - 377
Target Start/End: Complemental strand, 37954417 - 37954340
Alignment:
Q  300 gaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatattctt 377  Q
    ||||| ||| |||||||||||||||||||| |||||||||  |||||  |||||| |||||||| |||||||||||||    
T  37954417 gaaaaaaaattgtctcaaattatacgtcgctttacaataccgatgaaatattaatgttatttttcctattatattctt 37954340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 316 - 373
Target Start/End: Original strand, 29440914 - 29440971
Alignment:
Q  316 aaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||| || ||||| ||||||||| ||||||||||||||||||||||| |||||||||    
T  29440914 aaattgtatgtcgctttacaataccaatgaagcattaatattatttttcctattatat 29440971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 295 - 373
Target Start/End: Complemental strand, 7884541 - 7884463
Alignment:
Q  295 tttgggaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||| |||| ||| |||| ||||||||| ||||| ||||||||| ||||||  |||||| ||| ||||||||||||||    
T  7884541 tttggaaaaaaaaattgtcccaaattatatgtcgctttacaataccaatgaaatattaatgttactttttctattatat 7884463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 281 - 377
Target Start/End: Complemental strand, 16862015 - 16861919
Alignment:
Q  281 aaattatacgttgttttgggaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatattctt 377  Q
    ||||| || |||| ||||| |||| ||  |||| ||||||||| ||||| ||||||||| ||||||  |||||| ||| |||| |||||||||||||    
T  16862015 aaattgtatgttgctttggaaaaaaaatttgtcccaaattatatgtcgctttacaataccaatgaaatattaatgttacttttcctattatattctt 16861919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 373
Target Start/End: Original strand, 4393932 - 4393995
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||||||||||| ||||| ||||||||| ||||||  |||||||||| ||||  ||||||||    
T  4393932 tgtctcaaattatatgtcgctttacaataccaatgaaatattaatattacttttcttattatat 4393995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 287 - 377
Target Start/End: Original strand, 6806693 - 6806784
Alignment:
Q  287 tacgttgttttgggaaaagaaaat-gtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatattctt 377  Q
    ||||| ||||||| |||| ||||| ||| ||||||||| ||||   |||||||| ||||||  |||||| ||| ||||||||||||||||||    
T  6806693 tacgtcgttttggaaaaaaaaaattgtcacaaattatatgtcgttatacaataccaatgaaatattaatgttactttttctattatattctt 6806784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 300 - 363
Target Start/End: Complemental strand, 28072050 - 28071987
Alignment:
Q  300 gaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttt 363  Q
    ||||||||| |||||||||||| ||||||  ||||||||  |||||| ||||||| ||||||||    
T  28072050 gaaaagaaattgtctcaaattaaacgtcgttttacaataataatgaaacattaatgttattttt 28071987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 373
Target Start/End: Complemental strand, 31873657 - 31873594
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||| ||||||||||||||| ||||||||| ||||||  |||||| ||| |||| |||||||||    
T  31873657 tgtcccaaattatacgtcgctttacaataccaatgaaaaattaatgttacttttcctattatat 31873594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 373
Target Start/End: Complemental strand, 39645946 - 39645883
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||||||||| || ||||| ||||||||| ||||||  |||||||||| |||| |||||||||    
T  39645946 tgtctcaaattgtatgtcgctttacaataccaatgaaaaattaatattacttttcctattatat 39645883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 373
Target Start/End: Complemental strand, 43414055 - 43413992
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||||||||||| ||||| ||||||||  ||||||  |||||| |||||||| |||||||||    
T  43414055 tgtctcaaattatatgtcgctttacaatatcaatgaaatattaatgttatttttcctattatat 43413992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 301 - 371
Target Start/End: Original strand, 6247650 - 6247720
Alignment:
Q  301 aaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattat 371  Q
    |||| ||| |||||||||||||||||||| ||||||||| ||| ||  |||||| ||| |||| |||||||    
T  6247650 aaaaaaaattgtctcaaattatacgtcgctttacaataccaataaaatattaatgttacttttcctattat 6247720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 315 - 373
Target Start/End: Complemental strand, 9792300 - 9792242
Alignment:
Q  315 caaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||||||| ||||  ||||||||| ||||||  |||||||||| ||||||||||||||    
T  9792300 caaattatatgtcgttttacaataccaatgaaatattaatattactttttctattatat 9792242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 294 - 372
Target Start/End: Complemental strand, 15286613 - 15286535
Alignment:
Q  294 ttttgggaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattata 372  Q
    ||||||||||| ||| |||| ||||||||| ||||  ||||||||| |||| | ||||||| || ||||| ||||||||    
T  15286613 ttttgggaaaaaaaattgtcccaaattatatgtcgttttacaataccaatgcaacattaatgttgtttttcctattata 15286535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 294 - 372
Target Start/End: Complemental strand, 15466982 - 15466904
Alignment:
Q  294 ttttgggaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattata 372  Q
    ||||||||||| ||| |||| ||||||||| ||||  ||||||||| |||| | ||||||| || ||||| ||||||||    
T  15466982 ttttgggaaaaaaaattgtcccaaattatatgtcgttttacaataccaatgcaacattaatgttgtttttcctattata 15466904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 295 - 373
Target Start/End: Original strand, 16421889 - 16421967
Alignment:
Q  295 tttgggaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||| |||| ||| |||| |||||| || ||| | ||||||||| |||||| ||||||| ||| ||||||||||||||    
T  16421889 tttggaaaaaaaaattgtcccaaattgtatgtcactttacaataccaatgaatcattaatgttactttttctattatat 16421967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 331 - 377
Target Start/End: Original strand, 17911022 - 17911068
Alignment:
Q  331 ttacaatacaaatgaagcattaatattattttttctattatattctt 377  Q
    ||||||||| |||||| ||||||| ||| ||||||||||||||||||    
T  17911022 ttacaataccaatgaaacattaatgttaatttttctattatattctt 17911068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 331 - 373
Target Start/End: Original strand, 35455469 - 35455511
Alignment:
Q  331 ttacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||||||| |||||| ||||||| ||||||||||||||||||    
T  35455469 ttacaatactaatgaaacattaatgttattttttctattatat 35455511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 372
Target Start/End: Complemental strand, 3562508 - 3562451
Alignment:
Q  315 caaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattata 372  Q
    ||||||||| ||||  |||||||||  ||||| ||||||| |||||||||||||||||    
T  3562508 caaattataagtcgttttacaataccgatgaaccattaatgttattttttctattata 3562451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 372
Target Start/End: Complemental strand, 3598874 - 3598817
Alignment:
Q  315 caaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattata 372  Q
    ||||||||| ||||| ||||||||| |||| | ||||||||||||||||  |||||||    
T  3598874 caaattatatgtcgctttacaataccaatgcaacattaatattatttttcttattata 3598817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 373
Target Start/End: Original strand, 44012256 - 44012317
Alignment:
Q  312 tctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||| ||||| ||||  ||||||||  |||||| ||||||| ||||||||||||||||||    
T  44012256 tctcaagttataagtcgttttacaatatcaatgaaacattaatgttattttttctattatat 44012317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 301 - 373
Target Start/End: Original strand, 34865659 - 34865731
Alignment:
Q  301 aaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||| ||| |||| |||||| || || || ||||||||  |||||| ||||||| ||||||||||||||||||    
T  34865659 aaaaaaaattgtcccaaattgtatgtagctttacaatatcaatgaatcattaatgttattttttctattatat 34865731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 5e-18; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 310 - 373
Target Start/End: Original strand, 36443557 - 36443620
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||||||||||||||||| ||||||||| |||||| ||||||| ||||||||||||||||||    
T  36443557 tgtctcaaattatacgtcgctttacaataccaatgaaacattaatgttattttttctattatat 36443620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 300 - 377
Target Start/End: Original strand, 9110680 - 9110757
Alignment:
Q  300 gaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatattctt 377  Q
    ||||| ||| |||||||||||||| ||||| ||||||||| ||||||  |||||| |||||||| |||||||||||||    
T  9110680 gaaaaaaaattgtctcaaattatatgtcgctttacaataccaatgaaatattaatgttatttttcctattatattctt 9110757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 301 - 373
Target Start/End: Complemental strand, 22050714 - 22050642
Alignment:
Q  301 aaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||| ||| |||||||||||||| ||||| ||||||||| ||||||  |||||| ||||||||||||||||||    
T  22050714 aaaaaaaattgtctcaaattatatgtcgctttacaataccaatgaaatattaatgttattttttctattatat 22050642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 295 - 373
Target Start/End: Original strand, 11216621 - 11216699
Alignment:
Q  295 tttgggaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||| |||| ||| |||| ||||||||||||||| ||||||||| ||||||  |||||| |||||||| |||||||||    
T  11216621 tttggaaaaaaaaattgtcccaaattatacgtcgctttacaataccaatgaaatattaatgttatttttcctattatat 11216699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 310 - 373
Target Start/End: Original strand, 39293390 - 39293453
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||||||||||||  |||  ||||||||| |||||| ||||||| ||||||||||||||||||    
T  39293390 tgtctcaaattataaatcgttttacaataccaatgaaacattaatgttattttttctattatat 39293453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 310 - 373
Target Start/End: Original strand, 43446577 - 43446640
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||||||||||| ||||| ||||||||| ||||||  |||||| ||| ||||||||||||||    
T  43446577 tgtctcaaattatatgtcgctttacaataccaatgaaatattaatgttactttttctattatat 43446640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 331 - 373
Target Start/End: Original strand, 13196427 - 13196469
Alignment:
Q  331 ttacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||||||| |||||| ||||||||||||||||||||||||||    
T  13196427 ttacaataccaatgaaacattaatattattttttctattatat 13196469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 295 - 377
Target Start/End: Complemental strand, 20925950 - 20925868
Alignment:
Q  295 tttgggaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatattctt 377  Q
    |||||||||| ||| | || |||||| || ||||| ||||||||| |||||| ||||||  |||||||| |||||||||||||    
T  20925950 tttgggaaaaaaaattatcccaaattgtatgtcgctttacaataccaatgaatcattaacgttatttttcctattatattctt 20925868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 295 - 373
Target Start/End: Original strand, 44987744 - 44987822
Alignment:
Q  295 tttgggaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||| |||| ||| ||||||||||| || ||| ||||||||||| |||||| ||||||| ||| ||||| ||||||||    
T  44987744 tttggaaaaaaaaattgtctcaaattgtatgtcacattacaataccaatgaatcattaatgttactttttttattatat 44987822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 306 - 370
Target Start/End: Complemental strand, 33713656 - 33713592
Alignment:
Q  306 aaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctatta 370  Q
    |||||||||||||||||| ||||  ||||||||| | ||||| |||||| ||| |||||||||||    
T  33713656 aaaatgtctcaaattatatgtcgttttacaataccagtgaagaattaatgttactttttctatta 33713592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 373
Target Start/End: Complemental strand, 8444235 - 8444172
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||| ||||||||| ||||| ||||||||| ||||||  |||||| ||| ||||||||||||||    
T  8444235 tgtcccaaattatatgtcgctttacaatactaatgaaatattaatgttactttttctattatat 8444172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 281 - 372
Target Start/End: Complemental strand, 10198085 - 10197994
Alignment:
Q  281 aaattatacgttgttttgggaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattata 372  Q
    |||||||| || | ||||| |||| ||| |||| ||||||||| ||||  ||||||||| |||||| ||| ||| ||| |||||||||||||    
T  10198085 aaattataagtcgctttggaaaaaaaaattgtcccaaattataagtcgttttacaataccaatgaaacatcaatgttactttttctattata 10197994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 373
Target Start/End: Complemental strand, 18450167 - 18450104
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||| |||||| || ||||| ||||||||| |||||| ||||||||||| |||| |||||||||    
T  18450167 tgtcccaaattgtatgtcgctttacaataccaatgaatcattaatattacttttcctattatat 18450104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 373
Target Start/End: Complemental strand, 40483633 - 40483570
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||| ||||||||| ||||  ||||||||||||||||  |||||| |||||||| |||||||||    
T  40483633 tgtcccaaattatatgtcgttttacaatacaaatgaaatattaatgttatttttcctattatat 40483570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 373
Target Start/End: Original strand, 41186826 - 41186889
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||| ||||||||||||||| ||||||||| ||||||  |||||| ||| |||| |||||||||    
T  41186826 tgtcccaaattatacgtcgctttacaataccaatgaaaaattaatgttacttttcctattatat 41186889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 306 - 373
Target Start/End: Complemental strand, 44710075 - 44710008
Alignment:
Q  306 aaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||||| ||||||||| ||| | ||| ||||| ||||||  |||||| ||||||||||||||||||    
T  44710075 aaaatgtcccaaattatatgtccctttataataccaatgaaatattaatgttattttttctattatat 44710008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 295 - 373
Target Start/End: Original strand, 15848654 - 15848732
Alignment:
Q  295 tttgggaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||| |||| ||| ||||  ||||| || ||||| ||||||||| |||||| ||||||| ||| ||||||||||||||    
T  15848654 tttggaaaaaaaaattgtcctaaattgtatgtcgctttacaataccaatgaatcattaatgttactttttctattatat 15848732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 331 - 373
Target Start/End: Original strand, 30803502 - 30803544
Alignment:
Q  331 ttacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||||||| |||||| ||||||||||| ||||||||||||||    
T  30803502 ttacaataccaatgaaacattaatattactttttctattatat 30803544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 373
Target Start/End: Complemental strand, 40346487 - 40346414
Alignment:
Q  300 gaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||| ||| |||| ||||||||| ||||  ||| ||||| ||||||  |||||||||| ||||||||||||||    
T  40346487 gaaaaaaaattgtcccaaattatatgtcgttttataataccaatgaaatattaatattactttttctattatat 40346414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 310 - 374
Target Start/End: Complemental strand, 13197105 - 13197041
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatatt 374  Q
    ||||||||||||||  |||| ||||||||| ||| || |||||||  |||||||| |||||||||    
T  13197105 tgtctcaaattatatatcgctttacaataccaattaaacattaatgatattttttttattatatt 13197041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 325 - 373
Target Start/End: Original strand, 29360807 - 29360855
Alignment:
Q  325 gtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||| ||||||||| |||||| ||||||| ||| ||||||||||||||    
T  29360807 gtcgctttacaataccaatgaaacattaattttactttttctattatat 29360855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 295 - 363
Target Start/End: Original strand, 36173985 - 36174053
Alignment:
Q  295 tttgggaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttt 363  Q
    ||||| |||||||  |||||||||||||| ||||| ||||||||| ||||||  |||||| ||| ||||    
T  36173985 tttggaaaaagaatttgtctcaaattatatgtcgctttacaataccaatgaaatattaatgttactttt 36174053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 301 - 377
Target Start/End: Original strand, 8670405 - 8670481
Alignment:
Q  301 aaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatattctt 377  Q
    |||| ||| |||||||||||||||||||| ||||||||||||| ||  |||||| ||| |||| |||||||||||||    
T  8670405 aaaaaaaattgtctcaaattatacgtcgctttacaatacaaataaaatattaatgttacttttcctattatattctt 8670481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 315 - 377
Target Start/End: Original strand, 29409375 - 29409437
Alignment:
Q  315 caaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatattctt 377  Q
    ||||||||||||||| ||||||||||||||||  |||||| ||| |||| |||||||||||||    
T  29409375 caaattatacgtcgctttacaatacaaatgaaaaattaatgttacttttcctattatattctt 29409437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 310 - 373
Target Start/End: Complemental strand, 28536998 - 28536935
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||||||||||| ||||| ||||||||| ||||||  |||||| |||||||| |||||||||    
T  28536998 tgtctcaaattatatgtcgctttacaataccaatgaaaaattaatgttatttttcctattatat 28536935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 310 - 373
Target Start/End: Original strand, 42121945 - 42122008
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||||||||||| ||| | ||||||||| |||||| ||||||||||| |||| |||||||||    
T  42121945 tgtctcaaattatatgtcactttacaataccaatgaaacattaatattacttttcctattatat 42122008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 306 - 372
Target Start/End: Original strand, 3945171 - 3945237
Alignment:
Q  306 aaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattata 372  Q
    |||||||| ||||||||| ||||  ||||||||| |||| | ||||||| |||||||||||||||||    
T  3945171 aaaatgtcccaaattatatgtcgttttacaataccaatgcaacattaatgttattttttctattata 3945237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 310 - 372
Target Start/End: Original strand, 39938641 - 39938703
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattata 372  Q
    |||||||||||||| ||||| ||||||||| |||| | ||||||| ||| |||||||||||||    
T  39938641 tgtctcaaattatatgtcgctttacaataccaatgtaacattaatgttactttttctattata 39938703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 310 - 364
Target Start/End: Complemental strand, 47193719 - 47193665
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattatttttt 364  Q
    |||||||||||||| ||||  ||||||||| |||||||||||||||||| |||||    
T  47193719 tgtctcaaattatatgtcgttttacaatactaatgaagcattaatattacttttt 47193665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 299 - 372
Target Start/End: Complemental strand, 584624 - 584551
Alignment:
Q  299 ggaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattata 372  Q
    |||||| ||| |||| ||||||||| ||| | ||||||||| |||| | ||||||||||| |||||||||||||    
T  584624 ggaaaaaaaattgtcccaaattatatgtcactttacaatactaatgcaacattaatattactttttctattata 584551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 293 - 373
Target Start/End: Complemental strand, 36669782 - 36669702
Alignment:
Q  293 gttttgggaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||||| |||| ||  |||| ||||||||| ||||| ||||||||| ||||||  |||||| ||| ||||||||||||||    
T  36669782 gttttggaaaaaaaatttgtcccaaattatatgtcgctttacaataccaatgaaatattaatgttactttttctattatat 36669702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 377
Target Start/End: Complemental strand, 2850008 - 2849941
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatattctt 377  Q
    |||| ||||||||| ||||| ||||||||| |||| | ||||||| ||| ||||||||||||| ||||    
T  2850008 tgtcccaaattatatgtcgctttacaataccaatgcaacattaatgttactttttctattataatctt 2849941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 373
Target Start/End: Complemental strand, 10439435 - 10439373
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||||||||||||||||| ||||||||| ||||||  ||| || ||| ||||||||||||||    
T  10439435 tgtctcaaattatacgtcgctttacaataccaatgaaaaatt-atgttactttttctattatat 10439373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 373
Target Start/End: Complemental strand, 10453145 - 10453083
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||||||||||||||||| ||||||||| ||||||  ||| || ||| ||||||||||||||    
T  10453145 tgtctcaaattatacgtcgctttacaataccaatgaaaaatt-atgttactttttctattatat 10453083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 373
Target Start/End: Complemental strand, 23726613 - 23726550
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||| |||||| || ||||| ||||||||| ||||||  |||||||||| ||||||||||||||    
T  23726613 tgtcccaaattgtatgtcgctttacaataccaatgaaaaattaatattactttttctattatat 23726550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 373
Target Start/End: Complemental strand, 24924409 - 24924346
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||||| || || ||||| ||||||||| ||||||  |||||| ||||||||||||||||||    
T  24924409 tgtctcaatttgtatgtcgctttacaataccaatgaaaaattaatgttattttttctattatat 24924346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 373
Target Start/End: Original strand, 40704433 - 40704495
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||||||||||| ||||| ||||||||| ||||||  |||||| |||||||| |||||||||    
T  40704433 tgtctcaaattatatgtcgctttacaataccaatgaa-tattaatgttatttttcctattatat 40704495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 310 - 372
Target Start/End: Original strand, 18975983 - 18976045
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattata 372  Q
    |||||||||||||| ||||| ||||||||| |||| | ||||||| ||| |||| ||||||||    
T  18975983 tgtctcaaattatatgtcgctttacaataccaatgcaacattaatgttacttttcctattata 18976045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 315 - 377
Target Start/End: Complemental strand, 28234373 - 28234311
Alignment:
Q  315 caaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatattctt 377  Q
    ||||||||| ||| | ||| ||||| |||||| ||||||| |||||||| |||||||||||||    
T  28234373 caaattatatgtcactttagaataccaatgaaacattaatgttatttttcctattatattctt 28234311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 373
Target Start/End: Original strand, 37115782 - 37115839
Alignment:
Q  316 aaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||||| ||||| ||||||||| ||||||  |||||| ||| ||||||||||||||    
T  37115782 aaattatatgtcgctttacaataccaatgaaaaattaatgttactttttctattatat 37115839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 373
Target Start/End: Complemental strand, 43884357 - 43884300
Alignment:
Q  316 aaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||||| ||||| ||||||||| ||||||  |||||| ||| ||||||||||||||    
T  43884357 aaattatatgtcgctttacaataccaatgaaatattaatgttactttttctattatat 43884300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 293 - 373
Target Start/End: Original strand, 33616405 - 33616485
Alignment:
Q  293 gttttgggaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||||| |||| ||  |||||||||||||| ||||| ||| ||||| ||||||  ||| || ||| ||||||||||||||    
T  33616405 gttttggaaaaaaaatttgtctcaaattatatgtcgctttataataccaatgaaatatttatgttactttttctattatat 33616485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 300 - 372
Target Start/End: Original strand, 46342768 - 46342840
Alignment:
Q  300 gaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattata 372  Q
    ||||| ||| |||| ||||||||| ||||| ||||||||| | |||| || |||| ||| |||||||||||||    
T  46342768 gaaaaaaaattgtcacaaattataagtcgctttacaataccattgaaacagtaatgttactttttctattata 46342840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 310 - 373
Target Start/End: Complemental strand, 8462518 - 8462455
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||||||||||| ||||  ||||||||| |||||| ||||||| ||||||||||||||||||    
T  8462518 tgtctcaaattatatgtcgttttacaataccaatgaaacattaatgttattttttctattatat 8462455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 316 - 373
Target Start/End: Original strand, 41529159 - 41529216
Alignment:
Q  316 aaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||||| ||||| ||||||||| |||||| ||||||| ||||||||||||||||||    
T  41529159 aaattatatgtcgctttacaataccaatgaaacattaatgttattttttctattatat 41529216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 310 - 373
Target Start/End: Complemental strand, 6920967 - 6920904
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||| ||||||||| ||||| ||||||||| ||||||  ||||||||||||||| |||||||||    
T  6920967 tgtcccaaattatatgtcgctttacaataccaatgaaaaattaatattatttttcctattatat 6920904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 310 - 373
Target Start/End: Original strand, 34347315 - 34347378
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||| ||||||||| ||||| ||||||||| ||||||  ||||||||||||||| |||||||||    
T  34347315 tgtcccaaattatatgtcgctttacaataccaatgaaaaattaatattatttttcctattatat 34347378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 280 - 374
Target Start/End: Complemental strand, 38606246 - 38606151
Alignment:
Q  280 taaattatacgttgttttgggaaaagaaaat-gtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatatt 374  Q
    ||||||||| || | ||||| |||| ||||| |||  |||||||||||||| ||||||||| |||||| ||||||| ||| |||| ||||||||||    
T  38606246 taaattataagtcgctttggaaaaaaaaaattgtcctaaattatacgtcgctttacaataccaatgaaacattaatgttacttttcctattatatt 38606151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 299 - 373
Target Start/End: Original strand, 39640300 - 39640375
Alignment:
Q  299 ggaaaagaaaat-gtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||||||||| |||  |||||||||||||| | ||||||| ||||||  |||||| ||||||||||||||||||    
T  39640300 ggaaaagaaaattgtcctaaattatacgtcgcttaacaataccaatgaaatattaatgttattttttctattatat 39640375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 310 - 373
Target Start/End: Original strand, 51560790 - 51560853
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||| ||||||||| ||||| |||| |||| ||||||  |||||||||||||||||||||||||    
T  51560790 tgtcccaaattatatgtcgctttacgataccaatgaaaaattaatattattttttctattatat 51560853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 299 - 373
Target Start/End: Complemental strand, 83155 - 83081
Alignment:
Q  299 ggaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||| ||| |||||||||||||| ||||| ||||||||| ||||||  |||||| ||| |||| |||||||||    
T  83155 ggaaaaaaaattgtctcaaattatatgtcgctttacaataccaatgaaatattaatgttacttttcctattatat 83081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 315 - 373
Target Start/End: Complemental strand, 41457936 - 41457878
Alignment:
Q  315 caaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||||||| ||||| ||||||||| ||||||  |||||| ||||||||||||||||||    
T  41457936 caaattatatgtcgctttacaataccaatgaaatattaatgttattttttctattatat 41457878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 316 - 373
Target Start/End: Complemental strand, 8768680 - 8768623
Alignment:
Q  316 aaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||||| ||||| ||||||||| ||||||  |||||| ||||||||||||||||||    
T  8768680 aaattatatgtcgctttacaataccaatgaaatattaatgttattttttctattatat 8768623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 312 - 373
Target Start/End: Complemental strand, 40052382 - 40052321
Alignment:
Q  312 tctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||||||||| ||||| ||||||||| ||| || ||||||| |||||||| |||||||||    
T  40052382 tctcaaattatatgtcgctttacaataccaataaaacattaatgttatttttcctattatat 40052321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 293 - 372
Target Start/End: Original strand, 8878789 - 8878868
Alignment:
Q  293 gttttgggaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattata 372  Q
    ||||| |||||| ||| |||||||||||||| ||||| ||| ||||  |||| | ||||||| ||| |||||||||||||    
T  8878789 gttttaggaaaaaaaattgtctcaaattatatgtcgctttaaaatatcaatgcaacattaatgttactttttctattata 8878868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 373
Target Start/End: Complemental strand, 13985507 - 13985444
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||||||||||| || |  ||||||||| |||||| ||||||| |||||||| |||||||||    
T  13985507 tgtctcaaattatatgttgatttacaataccaatgaaacattaatgttatttttcctattatat 13985444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 281 - 372
Target Start/End: Complemental strand, 25279555 - 25279464
Alignment:
Q  281 aaattatacgttgttttgggaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattata 372  Q
    |||||||| |||||||||  |||| ||| |||||||||||||| ||||  ||||||||  ||| ||| |||||| |||  ||||||||||||    
T  25279555 aaattataagttgttttgtaaaaaaaaattgtctcaaattataagtcgttttacaatatcaataaagtattaatgttacattttctattata 25279464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 373
Target Start/End: Complemental strand, 34967568 - 34967505
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||| |||||| || ||||| ||||||||| ||||||  |||||| ||||||||||||||||||    
T  34967568 tgtcccaaattgtatgtcgctttacaataccaatgaaaaattaatgttattttttctattatat 34967505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 373
Target Start/End: Original strand, 52177827 - 52177890
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||||||||| || ||| | ||||||||| |||||| ||||||||||| |||| |||||||||    
T  52177827 tgtctcaaattgtatgtctctttacaataccaatgaatcattaatattacttttcctattatat 52177890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 315 - 377
Target Start/End: Original strand, 6049746 - 6049807
Alignment:
Q  315 caaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatattctt 377  Q
    ||||||||| ||||  ||||||||| ||||||| |||||||||| |||||||||||| |||||    
T  6049746 caaattatatgtcgttttacaataccaatgaagaattaatatta-tttttctattattttctt 6049807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 310 - 372
Target Start/End: Original strand, 8307830 - 8307892
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattata 372  Q
    |||| ||||||||| ||||| ||||||||| |||| | ||||||||||||||||  |||||||    
T  8307830 tgtcccaaattatatgtcgctttacaataccaatgcaacattaatattatttttcttattata 8307892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 311 - 373
Target Start/End: Complemental strand, 42334494 - 42334432
Alignment:
Q  311 gtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||||||| || ||| | ||| ||||| |||||| ||||||| ||||||||||||||||||    
T  42334494 gtctcaaattgtatgtcactttagaataccaatgaaacattaatgttattttttctattatat 42334432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 373
Target Start/End: Original strand, 20793387 - 20793444
Alignment:
Q  316 aaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||||||||||| ||||||||| ||||||  ||| || ||||||||| ||||||||    
T  20793387 aaattatacgtcgctttacaataccaatgaaatatttatgttattttttttattatat 20793444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 373
Target Start/End: Complemental strand, 26551719 - 26551646
Alignment:
Q  300 gaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||| ||| ||||||||||| ||  |||| ||||||||| |||||| ||||||| ||| |||| |||||||||    
T  26551719 gaaaaaaaattgtctcaaattgtatatcgctttacaataccaatgaatcattaatgttacttttcctattatat 26551646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 306 - 370
Target Start/End: Original strand, 6260503 - 6260567
Alignment:
Q  306 aaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctatta 370  Q
    |||||||||||||||||| ||||  ||||||||  |||||| |||||||  || |||||||||||    
T  6260503 aaaatgtctcaaattataagtcgttttacaatatcaatgaatcattaatgctactttttctatta 6260567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 300 - 372
Target Start/End: Original strand, 46762150 - 46762222
Alignment:
Q  300 gaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattata 372  Q
    ||||| ||| |||| ||||||||||||||| ||||||||| |||| | ||||||| ||| ||||  |||||||    
T  46762150 gaaaaaaaattgtcccaaattatacgtcgctttacaataccaatgcaacattaatgttacttttcttattata 46762222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 310 - 372
Target Start/End: Original strand, 5288890 - 5288952
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattata 372  Q
    |||||||||||||| ||||| ||||||||| |||| | ||||||| |||||||||||||||||    
T  5288890 tgtctcaaattatatgtcgctttacaataccaatgcaacattaatgttattttttctattata 5288952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 316 - 373
Target Start/End: Complemental strand, 13090099 - 13090042
Alignment:
Q  316 aaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||| |||||||| ||||||||| |||||||||||||||||||||||  ||||||||    
T  13090099 aaattctacgtcgctttacaataccaatgaagcattaatattatttttcttattatat 13090042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 293 - 373
Target Start/End: Original strand, 36487310 - 36487390
Alignment:
Q  293 gttttgggaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||||| |||| ||  |||| |||||| || ||||  ||||||||| |||||||||||||| ||||||||||||||||||    
T  36487310 gttttggaaaaaaaatttgtcccaaattgtatgtcgttttacaataccaatgaagcattaatgttattttttctattatat 36487390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 293 - 373
Target Start/End: Original strand, 40555096 - 40555176
Alignment:
Q  293 gttttgggaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||| |||||| ||  |||| ||||||||| ||||| ||||||||| ||||||  |||||| ||||||||||||||||||    
T  40555096 gtttttggaaaaaaatttgtcccaaattatatgtcgctttacaataccaatgaaatattaatgttattttttctattatat 40555176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 315 - 373
Target Start/End: Complemental strand, 15268506 - 15268448
Alignment:
Q  315 caaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||||||| ||||| ||||||||| |||||| ||||||| || |||||||||||||||    
T  15268506 caaattatatgtcgctttacaataccaatgaaacattaatgttgttttttctattatat 15268448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 310 - 372
Target Start/End: Complemental strand, 19282679 - 19282617
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattata 372  Q
    |||||||||||||||||||| ||||||||| |||| |  |||||| |||||||| ||||||||    
T  19282679 tgtctcaaattatacgtcgctttacaataccaatgcaatattaatgttatttttcctattata 19282617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 315 - 373
Target Start/End: Complemental strand, 43403466 - 43403408
Alignment:
Q  315 caaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||||||| ||||||||||||||| ||||||  |||||||||| |||| |||||||||    
T  43403466 caaattatatgtcgcattacaataccaatgaaaaattaatattacttttcctattatat 43403408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 300 - 372
Target Start/End: Original strand, 23991745 - 23991817
Alignment:
Q  300 gaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattata 372  Q
    ||||| ||| |||||||||||||| ||||| ||||||||| |||| | ||||||| ||| |||| ||||||||    
T  23991745 gaaaaaaaattgtctcaaattatatgtcgctttacaataccaatgcaacattaatgttacttttcctattata 23991817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 314 - 373
Target Start/End: Complemental strand, 2606654 - 2606595
Alignment:
Q  314 tcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||||||||  |||| ||||||||||||||||  |||||| |||||||| |||||||||    
T  2606654 tcaaattatatctcgctttacaatacaaatgaaaaattaatgttatttttcctattatat 2606595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 315 - 374
Target Start/End: Original strand, 8883247 - 8883306
Alignment:
Q  315 caaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatatt 374  Q
    ||||||||| ||||| |||||||||  |||||  ||||||||||||||| ||||||||||    
T  8883247 caaattatatgtcgctttacaataccgatgaaaaattaatattatttttcctattatatt 8883306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 373
Target Start/End: Original strand, 9246069 - 9246132
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||||||||||| ||||| ||||||||| |||||| ||||||| ||| ||||  ||||||||    
T  9246069 tgtctcaaattatatgtcgctttacaataccaatgaaacattaatgttacttttcttattatat 9246132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 373
Target Start/End: Original strand, 10164720 - 10164783
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||||||||| || ||||| ||||||||| ||||||  |||||| |||||||| |||||||||    
T  10164720 tgtctcaaattgtatgtcgctttacaataccaatgaaatattaatgttatttttcctattatat 10164783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 373
Target Start/End: Original strand, 14341796 - 14341859
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||||||||||| ||||| ||||||||  |||||| || |||| |||||||| |||||||||    
T  14341796 tgtctcaaattatatgtcgctttacaatatcaatgaaacactaatgttatttttcctattatat 14341859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 301 - 372
Target Start/End: Original strand, 26256334 - 26256405
Alignment:
Q  301 aaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattata 372  Q
    |||| ||||| |||||||||||| ||||| ||||||||  |||| | ||||||| |||||||| ||||||||    
T  26256334 aaaaaaaaatctctcaaattatatgtcgctttacaatattaatgcaacattaatgttatttttcctattata 26256405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 310 - 372
Target Start/End: Original strand, 35288159 - 35288221
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattata 372  Q
    |||||||||||||| ||||| ||||||||| |||| | ||||||| ||| |||| ||||||||    
T  35288159 tgtctcaaattatatgtcgctttacaataccaatgcaacattaatgttacttttcctattata 35288221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 301 - 373
Target Start/End: Original strand, 6334986 - 6335058
Alignment:
Q  301 aaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||| ||| |||| ||||||||| ||  | ||||||||| |||||| ||||||||||| |||| |||||||||    
T  6334986 aaaaaaaattgtcccaaattatatgttactttacaataccaatgaaacattaatattacttttcctattatat 6335058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 301 - 373
Target Start/End: Complemental strand, 40275427 - 40275355
Alignment:
Q  301 aaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||| ||| |||| |||||| || || || ||||||||| |||||| ||||||| ||| ||||||||||||||    
T  40275427 aaaaaaaattgtcccaaattgtatgttgctttacaataccaatgaatcattaatgttactttttctattatat 40275355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 301 - 373
Target Start/End: Original strand, 10659235 - 10659307
Alignment:
Q  301 aaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||| ||| |||||||||||||||||||| | ||||||| |||||| ||||||| ||| |||| |||||||||    
T  10659235 aaaaaaaattgtctcaaattatacgtcgcttaacaataccaatgaaacattaatgttacttttcctattatat 10659307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 300 - 372
Target Start/End: Original strand, 52262258 - 52262330
Alignment:
Q  300 gaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattata 372  Q
    ||||| ||| |||| ||||||||||||| | ||||||||| |||||| ||||||| ||| |||||||||||||    
T  52262258 gaaaaaaaattgtcccaaattatacgtcactttacaataccaatgaaacattaatgttactttttctattata 52262330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 310 - 373
Target Start/End: Original strand, 4756353 - 4756416
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||||||||||| ||||| |||  |||| |||||| |||||||||||||||| |||||||||    
T  4756353 tgtctcaaattatatgtcgctttaagataccaatgaaacattaatattatttttcctattatat 4756416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 310 - 373
Target Start/End: Original strand, 9794516 - 9794579
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||| ||||||||| ||||| ||||||||| ||||||  |||||| ||||||||||||||||||    
T  9794516 tgtcccaaattatatgtcgctttacaataccaatgaaatattaatgttattttttctattatat 9794579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 310 - 373
Target Start/End: Complemental strand, 52060509 - 52060446
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||||||||||| ||||| ||||||||| ||||||  |||||||||| |||| |||||||||    
T  52060509 tgtctcaaattatatgtcgctttacaataccaatgaaaaattaatattacttttcctattatat 52060446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 310 - 373
Target Start/End: Complemental strand, 54747945 - 54747882
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||| ||||||||| ||||| ||||||||| ||||||  |||||| ||||||||||||||||||    
T  54747945 tgtcccaaattatatgtcgctttacaataccaatgaaaaattaatgttattttttctattatat 54747882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 316 - 373
Target Start/End: Original strand, 54677664 - 54677721
Alignment:
Q  316 aaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||||| ||||  ||||||||| |||||| |||||||||||||||| |||||||||    
T  54677664 aaattatatgtcgttttacaataccaatgaaacattaatattatttttcctattatat 54677721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 377
Target Start/End: Complemental strand, 2510263 - 2510196
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatattctt 377  Q
    |||| ||||||||| ||||| ||||||||| ||||||  |||||| ||| |||| |||||||||||||    
T  2510263 tgtcccaaattatatgtcgctttacaataccaatgaaaaattaatgttacttttcctattatattctt 2510196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 377
Target Start/End: Complemental strand, 9508742 - 9508675
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatattctt 377  Q
    |||||||||||||| ||||| ||||||||  |||| |  |||||| ||| ||||||||||||||||||    
T  9508742 tgtctcaaattatatgtcgctttacaatatcaatgtaatattaatgttactttttctattatattctt 9508675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 377
Target Start/End: Complemental strand, 9516717 - 9516650
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatattctt 377  Q
    |||||||||||||| ||||| ||||||||  |||| |  |||||| ||| ||||||||||||||||||    
T  9516717 tgtctcaaattatatgtcgctttacaatatcaatgtaatattaatgttactttttctattatattctt 9516650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 373
Target Start/End: Complemental strand, 32100319 - 32100256
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||||||||| |||||| | ||| ||||| |||||| ||||||| |||||||| |||||||||    
T  32100319 tgtctcaaattgtacgtcactttagaataccaatgaaacattaatgttatttttcctattatat 32100256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 48574868 - 48574817
Alignment:
Q  322 tacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||||| ||||||||  ||||||  |||||||||||||||||||||||||    
T  48574868 tacgtcgctttacaatatcaatgaaaaattaatattattttttctattatat 48574817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 310 - 372
Target Start/End: Complemental strand, 240711 - 240649
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattata 372  Q
    |||| |||||| || ||| | ||||||||| |||||| ||||||||| |||||||||||||||    
T  240711 tgtcccaaattgtatgtcactttacaatactaatgaaacattaatatcattttttctattata 240649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 315 - 373
Target Start/End: Complemental strand, 42662691 - 42662633
Alignment:
Q  315 caaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||| || ||||| ||||||||| |||||| ||||||| ||| ||||||||||||||    
T  42662691 caaattgtatgtcgctttacaataccaatgaatcattaatgttactttttctattatat 42662633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 373
Target Start/End: Original strand, 3835300 - 3835357
Alignment:
Q  316 aaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||||| ||||| ||||||||| ||||||  |||||| ||| ||||||||||||||    
T  3835300 aaattatatgtcgctttacaataccaatgaaaaattaatgttactttttctattatat 3835357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 373
Target Start/End: Complemental strand, 42939807 - 42939750
Alignment:
Q  316 aaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||||| ||| | ||||||||| |||||||||||||| ||| |||| |||||||||    
T  42939807 aaattatatgtcactttacaataccaatgaagcattaatgttacttttcctattatat 42939750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 369
Target Start/End: Complemental strand, 50106285 - 50106232
Alignment:
Q  316 aaattatacgtcgcattacaatacaaatgaagcattaatattattttttctatt 369  Q
    |||||||||||| | ||||||||  |||||| ||||||| ||||||||||||||    
T  50106285 aaattatacgtcactttacaatatcaatgaaacattaatgttattttttctatt 50106232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 316 - 372
Target Start/End: Complemental strand, 1672929 - 1672873
Alignment:
Q  316 aaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattata 372  Q
    |||||||||||||| ||||||||| |||| | ||||||| ||| |||| ||||||||    
T  1672929 aaattatacgtcgctttacaataccaatgcaacattaatgttacttttcctattata 1672873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 310 - 346
Target Start/End: Complemental strand, 3442860 - 3442824
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaa 346  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  3442860 tgtctcaaattatacgtcgctttacaataccaatgaa 3442824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 293 - 373
Target Start/End: Original strand, 8724306 - 8724386
Alignment:
Q  293 gttttgggaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||||| |||| ||  |||| ||||||||| ||||| ||||||||| ||||||  ||| || ||| ||||||||||||||    
T  8724306 gttttggaaaaaaaatttgtcccaaattatatgtcgctttacaataccaatgaaatatttatgttactttttctattatat 8724386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 293 - 373
Target Start/End: Original strand, 9076193 - 9076273
Alignment:
Q  293 gttttgggaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||||| |||| ||  |||| ||||||||| ||||| ||||||||| ||||||  ||| || ||| ||||||||||||||    
T  9076193 gttttggaaaaaaaatttgtcccaaattatatgtcgctttacaataccaatgaaatatttatgttactttttctattatat 9076273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 325 - 377
Target Start/End: Complemental strand, 39507842 - 39507790
Alignment:
Q  325 gtcgcattacaatacaaatgaagcattaatattattttttctattatattctt 377  Q
    ||||| ||| ||||| ||||||| || ||| ||||||||||||||||||||||    
T  39507842 gtcgctttataatactaatgaagaatcaatgttattttttctattatattctt 39507790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 301 - 373
Target Start/End: Complemental strand, 43190736 - 43190664
Alignment:
Q  301 aaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||| ||| |||| |||||| || ||||| ||||||||  |||||||||||||| ||||||||  ||||||||    
T  43190736 aaaaaaaattgtcccaaattgtatgtcgctttacaatatcaatgaagcattaatgttatttttcatattatat 43190664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 310 - 373
Target Start/End: Complemental strand, 1114551 - 1114488
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||| ||||||||||||||| ||||||| | |||||| ||||||| |||||||| |||||||||    
T  1114551 tgtcccaaattatacgtcgctttacaattccaatgaaacattaatgttatttttcctattatat 1114488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 310 - 373
Target Start/End: Original strand, 32588720 - 32588783
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||| |||||| || ||||| ||||||||| |||||||| ||||| ||||||||||||||||||    
T  32588720 tgtcccaaattgtatgtcgctttacaataccaatgaagctttaatgttattttttctattatat 32588783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 373
Target Start/End: Complemental strand, 10629554 - 10629491
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||| ||||||||| ||||| ||||||||| ||||||  |||||| ||| ||||||||||||||    
T  10629554 tgtcccaaattatatgtcgctttacaataccaatgaaatattaatgttactttttctattatat 10629491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 373
Target Start/End: Complemental strand, 13631300 - 13631237
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||||||||||| ||||| ||||||||| ||||||  |||||| ||| |||| |||||||||    
T  13631300 tgtctcaaattatatgtcgctttacaataccaatgaaaaattaatgttacttttcctattatat 13631237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 377
Target Start/End: Original strand, 17441700 - 17441767
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatattctt 377  Q
    |||||||||||||| ||| | ||||||||| ||| || ||||||| ||| |||| |||||||||||||    
T  17441700 tgtctcaaattatatgtcactttacaataccaataaaacattaatgttacttttcctattatattctt 17441767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 334 - 373
Target Start/End: Complemental strand, 21047462 - 21047423
Alignment:
Q  334 caatacaaatgaagcattaatattattttttctattatat 373  Q
    |||||| ||||||| |||||||||||||||||||||||||    
T  21047462 caataccaatgaagaattaatattattttttctattatat 21047423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 310 - 372
Target Start/End: Original strand, 6833790 - 6833852
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattata 372  Q
    |||||||||||||| ||||| ||||||||| |||| | ||||||| ||| |||| ||||||||    
T  6833790 tgtctcaaattatatgtcgctttacaataccaatgtaacattaatgttacttttcctattata 6833852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 372
Target Start/End: Complemental strand, 11213618 - 11213560
Alignment:
Q  314 tcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattata 372  Q
    |||||||||| ||||| ||||||||| |||| | ||||||| ||| |||||||||||||    
T  11213618 tcaaattatatgtcgctttacaataccaatgcaacattaatgttactttttctattata 11213560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 310 - 372
Target Start/End: Original strand, 16465860 - 16465922
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattata 372  Q
    |||||||||||||| ||||  ||||||||| |||| |  |||||| |||||||||||||||||    
T  16465860 tgtctcaaattatatgtcgttttacaataccaatgcaatattaatgttattttttctattata 16465922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 331 - 373
Target Start/End: Complemental strand, 34219126 - 34219084
Alignment:
Q  331 ttacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||||||| |||||| |||||||||||||| |||||||||||    
T  34219126 ttacaataccaatgaatcattaatattatttcttctattatat 34219084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 325 - 373
Target Start/End: Complemental strand, 9225634 - 9225586
Alignment:
Q  325 gtcgcattacaatacaaatgaagcattaatattattttttctattatat 373  Q
    ||||| ||||||||| |||||||||||||| ||||||||  ||||||||    
T  9225634 gtcgctttacaataccaatgaagcattaatgttatttttcatattatat 9225586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 312 - 377
Target Start/End: Original strand, 33841287 - 33841348
Alignment:
Q  312 tctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatattctt 377  Q
    ||||||||||||  |||| |||||||||    ||| ||||||||||| ||||||||||||||||||    
T  33841287 tctcaaattatatatcgctttacaatac----gaaacattaatattactttttctattatattctt 33841348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 298 - 372
Target Start/End: Complemental strand, 188838 - 188764
Alignment:
Q  298 gggaaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattata 372  Q
    ||||||| ||| |||| ||||||||| ||||  ||||||||| |||| | |||||||||||||||| ||||||||    
T  188838 gggaaaaaaaattgtcccaaattatatgtcgatttacaataccaatgcaacattaatattatttttcctattata 188764  T

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Target: scaffold0768 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0768
Description:

Target: scaffold0768; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 310 - 372
Target Start/End: Complemental strand, 6138 - 6076
Alignment:
Q  310 tgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattata 372  Q
    |||||||||||||| ||||| ||||||||| |||| | ||||||| ||| |||| ||||||||    
T  6138 tgtctcaaattatatgtcgctttacaataccaatgtaacattaatgttacttttcctattata 6076  T

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Target: scaffold0154 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 301 - 377
Target Start/End: Complemental strand, 4226 - 4150
Alignment:
Q  301 aaaagaaaatgtctcaaattatacgtcgcattacaatacaaatgaagcattaatattattttttctattatattctt 377  Q
    |||| ||| ||| ||||||| || ||| | ||||||||  |||||| ||||||| ||| ||||||||||||||||||    
T  4226 aaaaaaaattgtttcaaattgtatgtcactttacaatatcaatgaaacattaatgttactttttctattatattctt 4150  T

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