View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5768_high_14 (Length: 361)

Name: NF5768_high_14
Description: NF5768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5768_high_14
NF5768_high_14
[»] chr1 (5 HSPs)
chr1 (172-351)||(38884929-38885114)
chr1 (116-176)||(34307132-34307192)
chr1 (116-176)||(28647490-28647549)
chr1 (116-169)||(19258674-19258726)
chr1 (121-169)||(39249864-39249911)
[»] chr2 (6 HSPs)
chr2 (108-171)||(37914236-37914299)
chr2 (116-172)||(36315698-36315754)
chr2 (119-173)||(33732709-33732762)
chr2 (116-181)||(16089958-16090022)
chr2 (116-168)||(3830900-3830951)
chr2 (116-172)||(37498861-37498917)
[»] chr4 (8 HSPs)
chr4 (117-171)||(46192497-46192551)
chr4 (113-174)||(45829254-45829314)
chr4 (116-176)||(44275843-44275902)
chr4 (117-171)||(49243953-49244006)
chr4 (122-173)||(7217909-7217959)
chr4 (116-171)||(21390955-21391009)
chr4 (116-169)||(35545050-35545102)
chr4 (121-173)||(28093093-28093144)
[»] chr3 (4 HSPs)
chr3 (116-171)||(38231429-38231484)
chr3 (116-173)||(30735493-30735549)
chr3 (124-172)||(51339782-51339829)
chr3 (116-172)||(29472946-29473001)
[»] chr5 (7 HSPs)
chr5 (121-173)||(40887939-40887990)
chr5 (116-171)||(19596067-19596122)
chr5 (121-171)||(2237419-2237468)
chr5 (119-173)||(31800698-31800751)
chr5 (121-171)||(39371070-39371119)
chr5 (122-171)||(13347272-13347320)
chr5 (121-174)||(14831687-14831739)
[»] chr7 (7 HSPs)
chr7 (122-171)||(36346564-36346612)
chr7 (121-173)||(26972200-26972251)
chr7 (127-183)||(29953559-29953614)
chr7 (116-174)||(13108284-13108341)
chr7 (121-174)||(28307491-28307543)
chr7 (116-172)||(5811162-5811217)
chr7 (116-172)||(46475162-46475217)
[»] scaffold0043 (1 HSPs)
scaffold0043 (116-172)||(87161-87216)
[»] chr8 (3 HSPs)
chr8 (122-172)||(36189358-36189407)
chr8 (122-171)||(10203808-10203856)
chr8 (116-173)||(18184690-18184746)


Alignment Details
Target: chr1 (Bit Score: 143; Significance: 5e-75; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 172 - 351
Target Start/End: Original strand, 38884929 - 38885114
Alignment:
Q  172 tttatgaaaacaagaatatgaatctatgtcaaagttgatgaggtttatcttagacaccgaatgagtagcttagcgatttttgagttaagatatcgaagta 271  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  38884929 tttatcaaaacaagaatatgaatctatgtcaaagttgatgaggtttatcttagacaccgaatgagtagcttagcgatttttgagttaagatatcgaagga 38885028  T
Q  272 gttctatgttgaatgtcgcgttggatcccagctgctaaca------tatccattaacaatttgagcattacttttccgaccctatg 351  Q
    ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||| |||||||||||||||||| ||||    
T  38885029 gttctatgttgaatgtcgcgttggatcccagctgctaacagtttaccatccattaacaatttaagcattacttttccgaccttatg 38885114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 34307192 - 34307132
Alignment:
Q  116 cacatggg-gtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcctttat 176  Q
    |||||||| ||||||||||||||||||| ||| |||| ||||||| ||||||||||||||||    
T  34307192 cacatgggagtgtacataagaggtgtatgaaaaaagg-tgtctacctatctttttcctttat 34307132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 28647490 - 28647549
Alignment:
Q  116 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcctttat 176  Q
    |||||||| ||||||| |||| ||||| ||| |||||||||||| ||||||||||||||||    
T  28647490 cacatgggatgtacatgagagatgtataaaa-aagggtgtctacctatctttttcctttat 28647549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 19258726 - 19258674
Alignment:
Q  116 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatcttttt 169  Q
    |||||||||||||||| |||| ||||| ||| |||||||||||| |||||||||    
T  19258726 cacatggggtgtacatgagagatgtat-aaaaaagggtgtctacctatcttttt 19258674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 39249911 - 39249864
Alignment:
Q  121 ggggtgtacataagaggtgtatcaaagaagggtgtctacatatcttttt 169  Q
    |||||||||||||||||||||| ||| || ||||||||| |||||||||    
T  39249911 ggggtgtacataagaggtgtatgaaa-aaaggtgtctacctatcttttt 39249864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 37914299 - 37914236
Alignment:
Q  108 taccttggcacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcc 171  Q
    |||| ||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  37914299 taccctggtacatggggtgtacataagaggtgtatcaaaaaagggtgtctacctatctttttcc 37914236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 36315698 - 36315754
Alignment:
Q  116 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcct 172  Q
    |||||| |||||||||||||||||||||||| |||| ||||||| ||||||||||||    
T  36315698 cacatgaggtgtacataagaggtgtatcaaaaaaggatgtctacctatctttttcct 36315754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 33732709 - 33732762
Alignment:
Q  119 atggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcctt 173  Q
    |||||||||||||||||||||||| ||| |||||||||||| |||||||||||||    
T  33732709 atggggtgtacataagaggtgtatgaaa-aagggtgtctacctatctttttcctt 33732762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 181
Target Start/End: Original strand, 16089958 - 16090022
Alignment:
Q  116 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcctttatgaaaa 181  Q
    ||||||||||||||||||||||||||| ||| || ||||||||| ||||||||||||  |||||||    
T  16089958 cacatggggtgtacataagaggtgtatgaaa-aaaggtgtctacctatctttttcctaaatgaaaa 16090022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 3830951 - 3830900
Alignment:
Q  116 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttt 168  Q
    ||||||||||||||||||||||||||| ||| |||||||||||| ||||||||    
T  3830951 cacatggggtgtacataagaggtgtatgaaa-aagggtgtctacctatctttt 3830900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 37498917 - 37498861
Alignment:
Q  116 cacatgggg-tgtacataagaggtgtatcaaagaagggtgtctacatatctttttcct 172  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||| ||||||||||||    
T  37498917 cacatggggatgtacataagaggtgtataaaa-aagggtgtctacctatctttttcct 37498861  T

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Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 46192497 - 46192551
Alignment:
Q  117 acatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcc 171  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  46192497 acatggggtgtacataagaggtgtatcaaaaaagggtgtctacctatctttttcc 46192551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 45829314 - 45829254
Alignment:
Q  113 tggcacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttccttt 174  Q
    ||||| ||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||    
T  45829314 tggcatatggggtgtacataa-aggtgtatcaaaaaagggtgtctacctatctttttccttt 45829254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 44275843 - 44275902
Alignment:
Q  116 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcctttat 176  Q
    ||||||||||||||||||||||||||| ||| |||||||||||  ||||||||||||||||    
T  44275843 cacatggggtgtacataagaggtgtatgaaa-aagggtgtctatctatctttttcctttat 44275902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 49243953 - 49244006
Alignment:
Q  117 acatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcc 171  Q
    |||||| ||||||||||||||||||| ||| |||| |||||||||||||||||||    
T  49243953 acatggagtgtacataagaggtgtatgaaa-aaggatgtctacatatctttttcc 49244006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 7217909 - 7217959
Alignment:
Q  122 gggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcctt 173  Q
    ||||||||||||||||||||| ||| |||||||| ||| |||||||||||||    
T  7217909 gggtgtacataagaggtgtatgaaa-aagggtgtttacctatctttttcctt 7217959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 21391009 - 21390955
Alignment:
Q  116 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcc 171  Q
    |||||| ||||||||||| |||||||| ||| |||||||||||| |||||||||||    
T  21391009 cacatgaggtgtacataaaaggtgtatgaaa-aagggtgtctacctatctttttcc 21390955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 35545050 - 35545102
Alignment:
Q  116 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatcttttt 169  Q
    ||||||| ||||||||||| ||||||| ||| |||||||||||| |||||||||    
T  35545050 cacatggagtgtacataagtggtgtatgaaa-aagggtgtctacctatcttttt 35545102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 28093144 - 28093093
Alignment:
Q  121 ggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcctt 173  Q
    ||||||||||||||| |||||| ||| |||| ||||||| |||||||||||||    
T  28093144 ggggtgtacataagaagtgtatgaaa-aaggatgtctacctatctttttcctt 28093093  T

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Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 38231429 - 38231484
Alignment:
Q  116 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcc 171  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||    
T  38231429 cacatggggtgtacataagaggtgtatcaaaaaaggatgtctacctatctttttcc 38231484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 30735549 - 30735493
Alignment:
Q  116 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcctt 173  Q
    ||||||| ||||||||||| ||||||| ||| |||||||||||| |||||||||||||    
T  30735549 cacatggagtgtacataagtggtgtatgaaa-aagggtgtctacctatctttttcctt 30735493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 51339829 - 51339782
Alignment:
Q  124 gtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcct 172  Q
    ||||||||||||||||||| ||| |||||||||||| ||||||||||||    
T  51339829 gtgtacataagaggtgtatgaaa-aagggtgtctacctatctttttcct 51339782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 29472946 - 29473001
Alignment:
Q  116 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcct 172  Q
    |||||||||||| |||||| ||||||| ||| |||| ||||||| ||||||||||||    
T  29472946 cacatggggtgtgcataagtggtgtatgaaa-aaggatgtctacctatctttttcct 29473001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 40887990 - 40887939
Alignment:
Q  121 ggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcctt 173  Q
    |||||||||||||||||||||| ||| |||||||||||| |||||||||||||    
T  40887990 ggggtgtacataagaggtgtatgaaa-aagggtgtctacctatctttttcctt 40887939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 19596122 - 19596067
Alignment:
Q  116 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcc 171  Q
    ||||||||||||||||||||||| | ||||| |||| ||||||| |||||||||||    
T  19596122 cacatggggtgtacataagaggtatttcaaaaaaggatgtctacctatctttttcc 19596067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 2237419 - 2237468
Alignment:
Q  121 ggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcc 171  Q
    ||||||||||||||| |||||| ||| |||||||||||| |||||||||||    
T  2237419 ggggtgtacataagaagtgtatgaaa-aagggtgtctacctatctttttcc 2237468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 31800698 - 31800751
Alignment:
Q  119 atggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcctt 173  Q
    |||||||||||| ||||||||||| ||| |||||||||| | |||||||||||||    
T  31800698 atggggtgtacacaagaggtgtatgaaa-aagggtgtctgcctatctttttcctt 31800751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 39371070 - 39371119
Alignment:
Q  121 ggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcc 171  Q
    ||||||||||||||| |||||| ||| |||||||||||| |||||||||||    
T  39371070 ggggtgtacataagaagtgtatgaaa-aagggtgtctacctatctttttcc 39371119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 13347272 - 13347320
Alignment:
Q  122 gggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcc 171  Q
    |||||||||||||| |||||| ||| |||||||||||| |||||||||||    
T  13347272 gggtgtacataagaagtgtatgaaa-aagggtgtctacctatctttttcc 13347320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 14831687 - 14831739
Alignment:
Q  121 ggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttccttt 174  Q
    ||||||||||||||| |||||| ||| |||||||| ||| ||||||||||||||    
T  14831687 ggggtgtacataagaagtgtatgaaa-aagggtgtttacctatctttttccttt 14831739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 36346612 - 36346564
Alignment:
Q  122 gggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcc 171  Q
    ||||||||||||||||||||| ||| |||||||||||| |||||||||||    
T  36346612 gggtgtacataagaggtgtatgaaa-aagggtgtctacctatctttttcc 36346564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 26972251 - 26972200
Alignment:
Q  121 ggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcctt 173  Q
    ||||||||||||||| |||||| ||| |||||||||||| |||||||||||||    
T  26972251 ggggtgtacataagaagtgtatgaaa-aagggtgtctacctatctttttcctt 26972200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 29953614 - 29953559
Alignment:
Q  127 tacataagaggtgtatcaaagaagggtgtctacatatctttttcctttatgaaaaca 183  Q
    ||||||||| |||||| ||| |||||||||||| |||||||||||||| ||||||||    
T  29953614 tacataagaagtgtatgaaa-aagggtgtctacctatctttttcctttttgaaaaca 29953559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 174
Target Start/End: Original strand, 13108284 - 13108341
Alignment:
Q  116 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttccttt 174  Q
    |||||| ||||||||| | |||||||| ||| |||||||||||| ||||||||||||||    
T  13108284 cacatgaggtgtacatgaaaggtgtataaaa-aagggtgtctacctatctttttccttt 13108341  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 28307543 - 28307491
Alignment:
Q  121 ggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttccttt 174  Q
    |||||||||||||||||||||| ||| || | ||||||| ||||||||||||||    
T  28307543 ggggtgtacataagaggtgtatgaaa-aaagatgtctacctatctttttccttt 28307491  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 5811217 - 5811162
Alignment:
Q  116 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcct 172  Q
    |||||| |||||||||  ||||||||| ||| |||||||||||| ||||||||||||    
T  5811217 cacatgaggtgtacatgggaggtgtataaaa-aagggtgtctacctatctttttcct 5811162  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 46475162 - 46475217
Alignment:
Q  116 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcct 172  Q
    |||||| | ||||||| |||||||||| ||| |||||||||||| ||||||||||||    
T  46475162 cacatgagatgtacatgagaggtgtataaaa-aagggtgtctacctatctttttcct 46475217  T

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Target: scaffold0043 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 87216 - 87161
Alignment:
Q  116 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcct 172  Q
    |||||||||||||||||| |||||||| ||| || ||||||||| ||||||||||||    
T  87216 cacatggggtgtacataaaaggtgtatgaaa-aaaggtgtctacctatctttttcct 87161  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 36189358 - 36189407
Alignment:
Q  122 gggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcct 172  Q
    ||||||||||||| ||||||| ||| |||||||||||| ||||||||||||    
T  36189358 gggtgtacataagtggtgtatgaaa-aagggtgtctacctatctttttcct 36189407  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 10203808 - 10203856
Alignment:
Q  122 gggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcc 171  Q
    ||||||||||||||| ||||| ||| |||||||||||| |||||||||||    
T  10203808 gggtgtacataagagatgtatgaaa-aagggtgtctacctatctttttcc 10203856  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 18184690 - 18184746
Alignment:
Q  116 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcctt 173  Q
    |||||| ||||||||||| |||||||| ||| |||| ||||||| |||||||||||||    
T  18184690 cacatgaggtgtacataaaaggtgtatgaaa-aaggatgtctacctatctttttcctt 18184746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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