View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5768_high_16 (Length: 330)
Name: NF5768_high_16
Description: NF5768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5768_high_16 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 150 - 330
Target Start/End: Original strand, 26881237 - 26881417
Alignment:
| Q |
150 |
cgtactgtacattagtgtactttgatatctaatgtgataaggcttaaagagctcnnnnnnncatcgtatacaaggagcccccttaaccatatatgcattg |
249 |
Q |
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| T |
26881237 |
cgtactgtacattagtgtacgttgatatctaatgtgataaggcttaaagagctcaaaaaaacatcgtatacaaggagcccccttaaccatatatgcattg |
26881336 |
T |
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| Q |
250 |
ggaatttggaccaattatcatgtgaatatttatcaaccttcaatttttagacaaggtattcattgattcaaattagatata |
330 |
Q |
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| T |
26881337 |
ggaatttggaccaattatcatgtgaatatttatcaaccttcaatttttagacaaggtcttcattgattcaaattagatata |
26881417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 26881094 - 26881165
Alignment:
| Q |
7 |
atagaataagacaagatttaacaggtaattgtgattaatgttagttaggtcgagttttaagtttttaacatg |
78 |
Q |
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| T |
26881094 |
atagaataagacacgatttaacaggtaattgtgattgatgttagttaggtcgagttttaagtttttaacatg |
26881165 |
T |
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