View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5768_high_17 (Length: 321)
Name: NF5768_high_17
Description: NF5768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5768_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 10 - 306
Target Start/End: Complemental strand, 54584634 - 54584338
Alignment:
| Q |
10 |
agatgaagaaatacaacttctcaaataataacttaaccctttgtgcctcagaaatcaagcctgatatcatgaaaacatcattctttggatcagttaacag |
109 |
Q |
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| T |
54584634 |
agatgaagaaatacaacttctcatataataacttaaccctttgtgcctcagaaatcaagcctgatatcatgaaaacatcgttctttggatcagttaacag |
54584535 |
T |
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| Q |
110 |
ctgcccaatagctgcaaatccgagttttttcnnnnnnngaagagacgtcggccacaggggaatgaagctagctcttgtattaaccctctcgttgatattt |
209 |
Q |
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| T |
54584534 |
ctgcccaatagctgcaaatccgagttttttcaaaaaaagaagagacgtcggccacaggggaatgaagctagctcttgtattaaccctctcgttgatattt |
54584435 |
T |
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| Q |
210 |
gcgcttgctggtattctgttcctagcatttggttgcagaaggaaaaataaaatgtgggaagtgaaacaaggttcatacagagaagaacagaatatct |
306 |
Q |
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| T |
54584434 |
gcgcttgctggtattctgttcctagcatttggttgcagaaggaaaaataaaatgtgggaagtgaaacaaggttcatacagagaagaacagaatatct |
54584338 |
T |
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