View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5768_high_4 (Length: 574)
Name: NF5768_high_4
Description: NF5768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5768_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 468; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 18 - 556
Target Start/End: Complemental strand, 47911233 - 47910698
Alignment:
| Q |
18 |
gatgatggtcacataaaacgaacaggtttatatatatcttatgtgatcaaaactataaacataaaatcaacgaaaattttctattttgttattctaacat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47911233 |
gatgatggtcacataaaacgaacaggtttatatatatcttatgtgatcaaaactataaacataaaatcaacgaaaattttctattttgttattctaacat |
47911134 |
T |
|
| Q |
118 |
tggtcattgttgtattatgaaggaacatgggtgactgcaagtgcacacatagtgactgctgtaataggatctggagtgttgtcattggcatgggctgttg |
217 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47911133 |
tggtcactgt---attatgaaggaacatgggtgactgcaagtgcacacatagtgactgctgtaataggatctggagtgttgtcattggcatgggctgttg |
47911037 |
T |
|
| Q |
218 |
cacaattgggttggattgcaggcagtgttattctcatactcctttcactcatcactctcctcacttcttttttactggctgattgctataggtatcctga |
317 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47911036 |
cacaattgggttggattgcagggagttttattctcatactcttttcactcatcactctcctcacttcttttttactggctgattgctataggtatcctga |
47910937 |
T |
|
| Q |
318 |
tcctgttcatggaaccagaaaccacacctacatggagatggtcaaaaatattctaggtaattaattaagactcataattttcagtgccaaattcagattt |
417 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
47910936 |
tcctattcatggaaccagaaaccacacctacatggagatggtcaaaaatattctaggtaattaattaagagtcataattttgagtgccaaattcagattt |
47910837 |
T |
|
| Q |
418 |
aacgataaagatttgattgcactaataggctgtaaacaatcaatttttattgttttagtttcaagagttttatctgtgtcatacttcggccaaaattcat |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
47910836 |
aacgataaagatttgattgcactaataggcagtaaacaatcaatttttattgttttagtttcaagagttttgtctgtgtcatacttcggccaaaattcat |
47910737 |
T |
|
| Q |
518 |
annnnnnnaattaatgtcaaaatgagttcaatcaagaat |
556 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |
|
|
| T |
47910736 |
atttttttaattaatgtcaaaatgagttcaatcaagaat |
47910698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 134 - 376
Target Start/End: Complemental strand, 47919934 - 47919692
Alignment:
| Q |
134 |
atgaaggaacatgggtgactgcaagtgcacacatagtgactgctgtaataggatctggagtgttgtcattggcatgggctgttgcacaattgggttggat |
233 |
Q |
| |
|
|||||||| ||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47919934 |
atgaaggatcatgggtaactgcgagtgcacacatagtgactgctgtgataggatctggagtgttgtcattggcatgggctgttgcacaattgggctggat |
47919835 |
T |
|
| Q |
234 |
tgcaggcagtgttattctcatactcctttcactcatcactctcctcacttcttttttactggctgattgctataggtatcctgatcctgttcatggaacc |
333 |
Q |
| |
|
|||||| || || ||||||||||| | ||||||||||||||||||||||||||| | || ||||||||||| |||||||||||| |||||||||| | | |
|
|
| T |
47919834 |
tgcagggtgtattgttctcatactcttctcactcatcactctcctcacttcttttctccttgctgattgctacaggtatcctgattctgttcatgggatc |
47919735 |
T |
|
| Q |
334 |
agaaaccacacctacatggagatggtcaaaaatattctaggta |
376 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
47919734 |
agaaaccccacctacatggcgatggtcaaaagtattctaggta |
47919692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 133 - 385
Target Start/End: Complemental strand, 47925165 - 47924913
Alignment:
| Q |
133 |
tatgaaggaacatgggtgactgcaagtgcacacatagtgactgctgtaataggatctggagtgttgtcattggcatgggctgttgcacaattgggttgga |
232 |
Q |
| |
|
||||||||||||||| | ||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
47925165 |
tatgaaggaacatggataactgcgagtgcacacatagtgacgactataataggatctggagtgttgtcattggcatgggctgttgctcagttgggttgga |
47925066 |
T |
|
| Q |
233 |
ttgcaggcagtgttattctcatactcctttcactcatcactctcctcacttcttttttactggctgattgctataggtatcctgatcctgttcatggaac |
332 |
Q |
| |
|
||||||| | | | | |||||| || ||||| ||| |||||||||||||||| | | ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
47925065 |
ttgcagggactatcactctcatcatcttttcagccattactctcctcacttcttgtctcatggctgattgctataggtatcctgatcctattcatggaat |
47924966 |
T |
|
| Q |
333 |
cagaaaccacacctacatggagatggtcaaaaatattctaggtaattaattaa |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47924965 |
cagaaaccacacctacatggagatggtcaaaaatattctaggtaattaattaa |
47924913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 134 - 379
Target Start/End: Complemental strand, 47904022 - 47903777
Alignment:
| Q |
134 |
atgaaggaacatgggtgactgcaagtgcacacatagtgactgctgtaataggatctggagtgttgtcattggcatgggctgttgcacaattgggttggat |
233 |
Q |
| |
|
|||||||||||||| | ||| | ||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| ||||| || ||||| ||||| |
|
|
| T |
47904022 |
atgaaggaacatggttcacttcgagtgcacacatagtgacggctgtaatagggtctggagtgttgtcgctggcatgggccgttgctcagttgggatggat |
47903923 |
T |
|
| Q |
234 |
tgcaggcagtgttattctcatactcctttcactcatcactctcctcacttcttttttactggctgattgctataggtatcctgatcctgttcatggaacc |
333 |
Q |
| |
|
| ||| | | || ||||||||||| |||| || |||||||| |||||||| || || ||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
47903922 |
cggagggactattgttctcatactcttttcccttgtcactctcttcacttctattctaatggctgattgctataggtatcctgaccctattcatggaacc |
47903823 |
T |
|
| Q |
334 |
agaaaccacacctacatggagatggtcaaaaatattctaggtaatt |
379 |
Q |
| |
|
||||||| || |||||| |||||||| |||| ||||||||||||| |
|
|
| T |
47903822 |
agaaaccctacatacatgaagatggtccaaaacattctaggtaatt |
47903777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 236
Target Start/End: Complemental strand, 10299845 - 10299763
Alignment:
| Q |
154 |
gcaagtgcacacatagtgactgctgtaataggatctggagtgttgtcattggcatgggctgttgcacaattgggttggattgc |
236 |
Q |
| |
|
||||||||||||||| | || ||||| || || ||||||||| |||| |||||||||||| |||||||| | || |||||||| |
|
|
| T |
10299845 |
gcaagtgcacacataatcacagctgtgattggttctggagtgctgtctttggcatgggctattgcacaacttggatggattgc |
10299763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 135 - 236
Target Start/End: Complemental strand, 51719972 - 51719871
Alignment:
| Q |
135 |
tgaaggaacatgggtgactgcaagtgcacacatagtgactgctgtaataggatctggagtgttgtcattggcatgggctgttgcacaattgggttggatt |
234 |
Q |
| |
|
|||||| ||||||||||||||||||||||| || | || || || |||||||| |||||||| ||| | |||||||| | || ||| ||||||||||| |
|
|
| T |
51719972 |
tgaaggtacatgggtgactgcaagtgcacatatcataacagcagtgataggatcaggagtgttatcacttgcatgggcaatagctcaaatgggttggatt |
51719873 |
T |
|
| Q |
235 |
gc |
236 |
Q |
| |
|
|| |
|
|
| T |
51719872 |
gc |
51719871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 42996968 - 42997014
Alignment:
| Q |
177 |
tgtaataggatctggagtgttgtcattggcatgggctgttgcacaat |
223 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||| |||| |||| |
|
|
| T |
42996968 |
tgtaataggatctggagtgttgtcattgacattggctattgctcaat |
42997014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University