View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5768_low_10 (Length: 422)
Name: NF5768_low_10
Description: NF5768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5768_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 125 - 421
Target Start/End: Original strand, 48635149 - 48635445
Alignment:
| Q |
125 |
atatatatatgataacattaaacttaaatatatatgtaattaattttatagttcagtcatctccttggatatacgaacagaggagcatggtggcacagcg |
224 |
Q |
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| T |
48635149 |
atatatatatgataacattaaacttaaatatatatgtaattaattttatagttcagtcatctccttggatatacgaacagaggagcatggtggcacagcg |
48635248 |
T |
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| Q |
225 |
gcgcaagatgtagagacgtgcacgttgctccttaaccaaagaagtgcatttgttgctaaaaccaaatccctttctctttctaaggaccttagcatcatcc |
324 |
Q |
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| T |
48635249 |
gcgcaagatgtagagacgagcacgttgttccttaaccaaagaagtgcatttgttgctaaaaccaaatccctttctctttctaaggaccttagcatcatcc |
48635348 |
T |
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| Q |
325 |
ataatcaatattgaaaactagtactgttcttcaaaggccaattatcacccnnnnnnnnnnnnnncgagtatgtagaggagatggactaatctatata |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
48635349 |
ataatcaatattgaaaactagtactgttcttcaaaggccaattatcacccaaaaaaagaaaaaacaagtatgtagaggagatggactaatctatata |
48635445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 31 - 134
Target Start/End: Original strand, 48635027 - 48635130
Alignment:
| Q |
31 |
ggaaggaagtaaggagagactaattaaggtggcagcctgcagtgaagctcatacaacctaactgaacaaacaatcaaccagatagaaatggagaatatat |
130 |
Q |
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| T |
48635027 |
ggaaggaaggaaggagagactaattaaggtggcagcctgcagtgaagctcatacaacctaactgaacaaacaatcaaccagatagaaatggagaatatat |
48635126 |
T |
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| Q |
131 |
atat |
134 |
Q |
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|||| |
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| T |
48635127 |
atat |
48635130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 179 - 268
Target Start/End: Complemental strand, 8554893 - 8554804
Alignment:
| Q |
179 |
agtcatctccttggatatacgaacagaggagcatggtggcacagcggcgcaagatgtagagacgtgcacgttgctccttaaccaaagaag |
268 |
Q |
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|||| |||||||| || ||| |||| || |||||||||||||| || || | |||||||||||| || |||||||||||||||||||||| |
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| T |
8554893 |
agtcttctccttgaatgtaccaacaaagaagcatggtggcacaacgacgaacgatgtagagacgagctcgttgctccttaaccaaagaag |
8554804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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