View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5768_low_11 (Length: 392)

Name: NF5768_low_11
Description: NF5768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5768_low_11
NF5768_low_11
[»] chr5 (2 HSPs)
chr5 (12-380)||(11736288-11736657)
chr5 (12-62)||(11735818-11735868)
[»] chr3 (2 HSPs)
chr3 (14-62)||(25986608-25986656)
chr3 (13-62)||(54158650-54158699)
[»] chr4 (2 HSPs)
chr4 (12-62)||(33813490-33813540)
chr4 (12-58)||(49806939-49806985)
[»] chr8 (1 HSPs)
chr8 (13-62)||(42944234-42944283)
[»] chr2 (1 HSPs)
chr2 (17-62)||(19182777-19182822)
[»] chr1 (1 HSPs)
chr1 (12-50)||(36156313-36156351)


Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 12 - 380
Target Start/End: Original strand, 11736288 - 11736657
Alignment:
Q  12 atgaagaacaagggcaattgtatcaataattttgaactaggggcagacataacannnnnnnnnggtgatagggtcaaaagnnnnnnnn-ttccttgtttt 110  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||| |||         |||||||||||    
T  11736288 atgaagaaaaagggcaattgtatcaataattttgaactaggggcagacataacatttttttt-ggtgatagggtcagaagaaaaaaaaattccttgtttt 11736386  T
Q  111 tctactaaggtatatatgagttgatcgggttttgtcttgagacaagaataatttgtgtttgtaaaaataaataaagtgcgtatttaatttgttttatttt 210  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||    
T  11736387 tctagtaaggtatatatgagttgatcgggttttgtcttgagacaagaataatttgtttttgtaaacataaataaagtgtgtatttaatttgttttatttt 11736486  T
Q  211 aaggaaagacacactttt-tctagcgtgctatatgcatgaatttttcattatcatttaacagactaatcttcatcataaacatctggacacacaaaatag 309  Q
    |||| ||||||||||||| ||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  11736487 aagggaagacacacttttttctagcgtgttatatgcatgattttttcactatcatttaacagactaatcttcattagaaacatctggacacacaaaatag 11736586  T
Q  310 gttatccattcccaagtgaattttttcaattgtccagagatcgaacacttaccatttaattaaggggtcca 380  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  11736587 gttatccattcccaagtgaattttttcaatagtccagagatcgaacacttaccatttaattaaggagtcca 11736657  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 11735868 - 11735818
Alignment:
Q  12 atgaagaacaagggcaattgtatcaataattttgaactaggggcagacata 62  Q
    |||||||||||||| ||||| |||||||||||||||||||||| |||||||    
T  11735868 atgaagaacaagggaaattgcatcaataattttgaactaggggtagacata 11735818  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 25986656 - 25986608
Alignment:
Q  14 gaagaacaagggcaattgtatcaataattttgaactaggggcagacata 62  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||    
T  25986656 gaagaacaggggcaattgtatcaataattttcaactaggggcagacata 25986608  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 54158650 - 54158699
Alignment:
Q  13 tgaagaacaagggcaattgtatcaataattttgaactaggggcagacata 62  Q
    ||||||||||||||| || || ||||||||||||| ||||||||||||||    
T  54158650 tgaagaacaagggcatttttaacaataattttgaaataggggcagacata 54158699  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 33813490 - 33813540
Alignment:
Q  12 atgaagaacaagggcaattgtatcaataattttgaactaggggcagacata 62  Q
    |||||||||| ||||| || ||||||||||||| |||||||||||||||||    
T  33813490 atgaagaacaggggcatttctatcaataattttaaactaggggcagacata 33813540  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 49806939 - 49806985
Alignment:
Q  12 atgaagaacaagggcaattgtatcaataattttgaactaggggcaga 58  Q
    |||||||||||||||  |||||||||| |||||||| ||||||||||    
T  49806939 atgaagaacaagggcttttgtatcaatgattttgaattaggggcaga 49806985  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 42944234 - 42944283
Alignment:
Q  13 tgaagaacaagggcaattgtatcaataattttgaactaggggcagacata 62  Q
    ||||||||| ||||| ||||||||||| |||| |||||||||||||||||    
T  42944234 tgaagaacaggggcatttgtatcaatagttttcaactaggggcagacata 42944283  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 19182822 - 19182777
Alignment:
Q  17 gaacaagggcaattgtatcaataattttgaactaggggcagacata 62  Q
    |||||||||||  |||||||||| ||||||||||||||||||||||    
T  19182822 gaacaagggcatatgtatcaatacttttgaactaggggcagacata 19182777  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 36156313 - 36156351
Alignment:
Q  12 atgaagaacaagggcaattgtatcaataattttgaacta 50  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  36156313 atgaagaacaggggtaattgtatcaataattttgaacta 36156351  T

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