View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5768_low_13 (Length: 369)
Name: NF5768_low_13
Description: NF5768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5768_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 8297061 - 8296706
Alignment:
| Q |
1 |
ggtaaaatgaattttctcaaaagctttatgcggatttatctctagtaaaatttcttgccttgttaatttcagtttgaagcatgaaaaactctgtatttaa |
100 |
Q |
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| T |
8297061 |
ggtaaaatgaattttctcaaaagctttatgcggatttatctctagtaaaatttcttgccttgttaatttcagtttgaagcatgaaaaactctgtatttaa |
8296962 |
T |
|
| Q |
101 |
gattctgaaaattctgctcatgatgttaagtgttaacctctgcattgctaatttcatgtcctgtatggtacttattgagggagctgaaaaagtttcggtt |
200 |
Q |
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| T |
8296961 |
cattctgaaaattctgctcatgatgttaagtgttaacctctgcattgctaatttcatgtcctgtatggtacttattcagggagctgaaaaagtttcggtt |
8296862 |
T |
|
| Q |
201 |
catcttataaacatgaagtagggtggtttttatttttgtttatatagaaaatgaattaggttggttttataactatgtctagtttcctgtcactcatttt |
300 |
Q |
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| T |
8296861 |
catcttataaacatgaagtagggtggtttttatttttgtttatatagaaaatgaattaggttggttttataactatgtctggtttcctgtcactcatctt |
8296762 |
T |
|
| Q |
301 |
caaagtttgaagtatgtaaaactatgtctgttatattctgaaattttttcttgatg |
356 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8296761 |
caatgtttgaagtatgtaaaactatgtctgttatattctgaaaatttttcttgatg |
8296706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 4 - 356
Target Start/End: Complemental strand, 8300636 - 8300283
Alignment:
| Q |
4 |
aaaatgaattttctcaaaagctttatgcggatttatctctagtaaaatttcttgccttgttaatttca--------gtttgaagcatgaaaaactctgta |
95 |
Q |
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| T |
8300636 |
aaaatgaagtgtctcgaaatctttacgcagatctatctcgagtaaaatttcttgccttgttaatttcattttcaaagtttgaagaatgaaaaactctgtc |
8300537 |
T |
|
| Q |
96 |
tttaagattctgaaaattctgctcatgatgttaagtgttaacctctgcattgctaatttcatgtcctgtatggtacttattgagggagctgaaaaagttt |
195 |
Q |
| |
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| T |
8300536 |
tttaatattctgaaaattttgctcatg-------gtgttaacctctgcattcctaattccatgtcctgtatggtaattattcagggagctgaaaaagttt |
8300444 |
T |
|
| Q |
196 |
cggttcatcttataaacatgaagtagggtggtttttatttttgtttatatagaaaatgaattaggttggttttataactatgtctagtttcctgtcactc |
295 |
Q |
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| T |
8300443 |
cggttcatcttataaacatgaagtagggtggtttttatttttgtttatatagaaaatgaattaggttggttttataactatgtctggtttcctgtcactc |
8300344 |
T |
|
| Q |
296 |
attttcaaagtttgaagtatgtaaaactatgtctgttatattctgaaattttttcttgatg |
356 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||| ||| ||| |||||||| |
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| T |
8300343 |
attttcaatgtttgaagtatgtaaaactatgtctgttatattctaaaaatttctcttgatg |
8300283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 8 - 195
Target Start/End: Original strand, 18279593 - 18279782
Alignment:
| Q |
8 |
tgaattttctcaaaagctttat---gcggatttatctctagtaaaatttcttgccttgttaatttca--------gtttgaagcatgaaaaactctgtat |
96 |
Q |
| |
|
|||||| ||||||||||||||| ||| | ||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||| || | |
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| T |
18279593 |
tgaattgtctcaaaagctttattatgcgtacttatctcgagtaaaatttcttggcttgttaatttcattttcaaagtttgaagcatgaaaaact--gtct |
18279690 |
T |
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| Q |
97 |
ttaagattctgaaaattctgctcatgatgttaagtgttaacctctgcattgctaatttcatgtcctgtatggtacttattgagggagctgaaaaagttt |
195 |
Q |
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|||| ||||||||| | ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
18279691 |
ttaatattctgaaagtattgctcatgatgtt-------aacctctgcatagctaatttcatgtcctgtatggtacttattcagggatctgaaaaagttt |
18279782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 282 - 356
Target Start/End: Original strand, 18279889 - 18279963
Alignment:
| Q |
282 |
gtttcctgtcactcattttcaaagtttgaagtatgtaaaactatgtctgttatattctgaaattttttcttgatg |
356 |
Q |
| |
|
||||||||| |||| |||||||||||||||||| |||||||||||||||| ||||||||| ||| |||||||| |
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| T |
18279889 |
gtttcctgtgcctcaacttcaaagtttgaagtatgcaaaactatgtctgttaaattctgaaaatttctcttgatg |
18279963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 1145261 - 1145074
Alignment:
| Q |
3 |
taaaatgaattttctcaaaagctttatgcggatttatctctagtaaaatttcttgccttgttaatttc--------agtttgaagcatgaaaaactctgt |
94 |
Q |
| |
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|||||||| || ||| ||||||||||||||||||||||| |||||||| |||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
1145261 |
taaaatgatttggctcgaaagctttatgcggatttatctcgagtaaaatatcttgcctggttaatttcattttcaaagtttgaagcatgaaaaactctg- |
1145163 |
T |
|
| Q |
95 |
atttaagattctgaaaattctgctcatgatgttaagtgttaacctctgcattgctaatttcatgtcctgtatggtacttattgagggagctgaaaaag |
192 |
Q |
| |
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||||| |||||||||||| ||||| ||||| |||||||||| |||||||||||||||| ||||||||| ||||| |||||| || ||||| |
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| T |
1145162 |
-tttaatattctgaaaattttgctcttgatg--------taacctctgctttgctaatttcatgtcttgtatggtaattattcagggaggtgcaaaag |
1145074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 235
Target Start/End: Original strand, 21120969 - 21121004
Alignment:
| Q |
200 |
tcatcttataaacatgaagtagggtggtttttattt |
235 |
Q |
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||||||||||||||||||||||| |||||||||||| |
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| T |
21120969 |
tcatcttataaacatgaagtaggctggtttttattt |
21121004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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