View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5768_low_18 (Length: 307)
Name: NF5768_low_18
Description: NF5768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5768_low_18 |
 | |
|
| [»] chr4 (6 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
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|
| [»] scaffold0005 (1 HSPs) |
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| [»] scaffold0548 (1 HSPs) |
| | |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 17 - 307
Target Start/End: Complemental strand, 22591070 - 22590783
Alignment:
| Q |
17 |
gaatatgtgttccatctatagtgccgatgcatccttcaaaataaggccaataccttctatcatccttgattttggacggaatttctgtgaagttaaaatc |
116 |
Q |
| |
|
||||||| ||| ||||||||| ||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
22591070 |
gaatatgcgtttcatctatagcaccgatgcatccattaaaataaggccaatatcttctatcatccttgattttggacggaatttatgtgaagttaaaatc |
22590971 |
T |
|
| Q |
117 |
aggaggcctcacaatttcttttgctagtaaacataaactttctaaaacctcattaaacttcctacttacggtctctccatatttttcaaatttattttga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| |||||||||||||| |
|
|
| T |
22590970 |
aggaggcctcacaatttcttttgctagtaaacataaactttctaaaacttcattaaacttcctacttacgatctct---gattttccaaatttattttga |
22590874 |
T |
|
| Q |
217 |
atatttctattagtctcgctatgcgcacaactccaaagaaacataacaagtgcctccaaggatgtcattttgtttgatgggtgcaaccatc |
307 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
22590873 |
atatttctattagtctcgctatgtgcacaactccaaagaaacataacaagtgcctccaaggatgtcatttcgtttgatgggtgcaaccatc |
22590783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 42 - 304
Target Start/End: Complemental strand, 13090938 - 13090675
Alignment:
| Q |
42 |
gatgcatccttcaaaataaggccaataccttctatcatcctt-gattttggacggaatttctgtgaagttaaaatcaggaggcctcacaatttcttttgc |
140 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13090938 |
gatgcatccttcaaaataaggccaataccttttatcatcctttgattttggacggaatttctgtgaagttaaaatcaggaggcctcacaatttcttttgc |
13090839 |
T |
|
| Q |
141 |
tagtaaacataaactttctaaaacctcattaaacttcctacttacggtctctccatatttttcaaatttattttgaatatttctattagtctcgctatgc |
240 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13090838 |
tagtaaacataaactttctaaaacttcactaaacctcctacttacggtctctcctgattttccaaatttattttgaatatttctattagtctcgctatgc |
13090739 |
T |
|
| Q |
241 |
gcacaactccaaagaaacataacaagtgcctccaaggatgtcattttgtttgatgggtgcaacc |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
13090738 |
gcacaactccaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaacc |
13090675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 307
Target Start/End: Complemental strand, 14642389 - 14642099
Alignment:
| Q |
17 |
gaatatgtgttccatctatagtgccgatgcatccttcaaaataaggccaataccttctatcatccttgattttggacggaatttctgtgaagttaaaatc |
116 |
Q |
| |
|
|||||||||||| |||||| | || ||||| |||||||||| |||||||||||| | ||||| || || || || ||| ||| || |||||||||||| |
|
|
| T |
14642389 |
gaatatgtgttctatctattgcaccaatgcacccttcaaaatgaggccaatacctacgatcattttttatcttagagggagtttttgcgaagttaaaatc |
14642290 |
T |
|
| Q |
117 |
aggaggcctcacaatttcttttgctagtaaacataaactttctaaaacctcattaaacttcctacttacggtctctccatatttttcaaatttattttga |
216 |
Q |
| |
|
|||||||| |||||||| ||||||| ||||||||||||||| ||||| || |||||| ||||| || |||||||| ||||| | |||||||| ||| |
|
|
| T |
14642289 |
cggaggccttacaatttcctttgctaataaacataaactttccaaaacttccccaaactttctactcacagtctctcctgattttccgaatttattctga |
14642190 |
T |
|
| Q |
217 |
atatttctattagtctcgctatgcgcacaactccaaagaaacataacaagtgcctccaaggatgtcattttgtttgatgggtgcaaccatc |
307 |
Q |
| |
|
| ||||| |||||| || ||||| || ||| ||||||| |||||||||||||||||||| |||||||||| || ||||| || ||||||| |
|
|
| T |
14642189 |
acatttcaattagtttcactatgtgcgcaagtccaaaggaacataacaagtgcctccaatgatgtcatttctttagatggatgtaaccatc |
14642099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 41 - 153
Target Start/End: Complemental strand, 11306781 - 11306669
Alignment:
| Q |
41 |
cgatgcatccttcaaaataaggccaataccttctatcatccttgattttggacggaatttctgtgaagttaaaatcaggaggcctcacaatttcttttgc |
140 |
Q |
| |
|
|||| |||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
11306781 |
cgatacatctttcaaaataaggccagtaccttctatcatctttgattttggacggaatttctgtaaagttaaaatcaggaggcctcacaatttcttttgc |
11306682 |
T |
|
| Q |
141 |
tagtaaacataaa |
153 |
Q |
| |
|
||||||||||||| |
|
|
| T |
11306681 |
tagtaaacataaa |
11306669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 211 - 307
Target Start/End: Complemental strand, 44743651 - 44743555
Alignment:
| Q |
211 |
ttttgaatatttctattagtctcgctatgcgcacaactccaaagaaacataacaagtgcctccaaggatgtcattttgtttgatgggtgcaaccatc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
44743651 |
ttttgaatatttctattagtctcgctatgcgcacaactccaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaaccatc |
44743555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 212 - 307
Target Start/End: Original strand, 4527746 - 4527841
Alignment:
| Q |
212 |
tttgaatatttctattagtctcgctatgcgcacaactccaaagaaacataacaagtgcctccaaggatgtcattttgtttgatgggtgcaaccatc |
307 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
4527746 |
tttgaatgtttttattagtctcgctatgcgcacaactccaaagaaacataacaagtgcctctaaggatgtcatttcatttgatgggtgcaaccatc |
4527841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 12 - 307
Target Start/End: Original strand, 26333320 - 26333614
Alignment:
| Q |
12 |
ggcaagaatatgtgttccatctatagtgccgatgcatccttcaaaataaggccaataccttctatcatccttgattttggacggaatttctgtgaagtta |
111 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26333320 |
ggcaggaatatgtgttccatctatagcaccgatacatccttcaaaataaggccaataccttctatcatccttgattttggacggaatttctgtaaagtta |
26333419 |
T |
|
| Q |
112 |
aaatcaggaggcctcacaatttcttttgctagtaaacataaactttctaaaacctcattaaacttcctacttacggtctctccatatttttcaaatttat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||| ||||||||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
26333420 |
aaatcaggaggcctcacaatttcttttgctaacaaacatacactttctaaaacttcactaaacttcctactaacggtctctcctgattttccaaatttat |
26333519 |
T |
|
| Q |
212 |
tttgaatatttctattagtctcgctatgcgcacaactccaaagaaacataacaagtgcctccaaggatgtcattttgtttgatgggtgcaaccatc |
307 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| || ||||||||||| ||||||| |
|
|
| T |
26333520 |
tttgaatgtttctattagtctcgctatgcgcacaaccccaaagaaacattacaagtgcctccaaggatgtca-ttcatttgatgggtgtaaccatc |
26333614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 6 - 307
Target Start/End: Original strand, 6578083 - 6578384
Alignment:
| Q |
6 |
aacaaaggcaagaatatgtgttccatctatagtgccgatgcatccttcaaaataaggccaataccttctatcatccttgattttggacggaatttctgtg |
105 |
Q |
| |
|
||||| |||| |||||||| |||||||||||| ||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6578083 |
aacaatggcaggaatatgtattccatctatagcaccgatacatccttcaaaataaggtcagtaccttctatcatccttgattttggacggaatttctgta |
6578182 |
T |
|
| Q |
106 |
aagttaaaatcaggaggcctcacaatttcttttgctagtaaacataaactttctaaaacctcattaaacttcctacttacggtctctccatatttttcaa |
205 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||| || ||||||||||| ||||| ||| |
|
|
| T |
6578183 |
aagttaaattcaggaggcctcacaatttcttttgctagcaaacataaactttctaaaacttcactaaacttcctgctaacggtctctcctgattttccaa |
6578282 |
T |
|
| Q |
206 |
atttattttgaatatttctattagtctcgctatgcgcacaactccaaagaaacataacaagtgcctccaaggatgtcattttgtttgatgggtgcaacca |
305 |
Q |
| |
|
||||||||||||| |||||||||||||| |||| |||||||||||||||||| |||| ||||||||||||| ||||||||| ||||||||||| ||||| |
|
|
| T |
6578283 |
atttattttgaatgtttctattagtctcactatacgcacaactccaaagaaatataataagtgcctccaagaatgtcatttcatttgatgggtgtaacca |
6578382 |
T |
|
| Q |
306 |
tc |
307 |
Q |
| |
|
|| |
|
|
| T |
6578383 |
tc |
6578384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 307
Target Start/End: Original strand, 38317747 - 38317946
Alignment:
| Q |
108 |
gttaaaatcaggaggcctcacaatttcttttgctagtaaacataaactttctaaaacctcattaaacttcctacttacggtctctccatatttttcaaat |
207 |
Q |
| |
|
|||||||||||||||| | ||||||| | |||||| |||||||||||| || | ||| ||| ||||||||||| ||||| || ||| ||||| |||| |
|
|
| T |
38317747 |
gttaaaatcaggaggcttaacaatttttcttgctaataaacataaactatccagaacttcaccaaacttcctacctacggcctttcctgattttccaaag |
38317846 |
T |
|
| Q |
208 |
ttattttgaatatttctattagtctcgctatgcgcacaactccaaagaaacataacaagtgcctccaaggatgtcattttgtttgatgggtgcaaccatc |
307 |
Q |
| |
|
|||||||| | |||| ||||||||| ||||| ||||||||||||||||||||| | |||||||| |||||||||| || ||||| || ||||||| |
|
|
| T |
38317847 |
ttattttggacattttgattagtctcactatgtgcacaactccaaagaaacatagtcaaagcctccaacgatgtcatttctttggatggatgtaaccatc |
38317946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 6 - 261
Target Start/End: Complemental strand, 3591250 - 3590995
Alignment:
| Q |
6 |
aacaaaggcaagaatatgtgttccatctatagtgccgatgcatccttcaaaataaggccaataccttctatcatccttgattttggacggaatttctgtg |
105 |
Q |
| |
|
||||| |||| ||||||| ||||||||||||| || |||||||||||||||| |||||||||||| ||||||| | |||||||| ||||||||| |
|
|
| T |
3591250 |
aacaatggcaggaatatgagttccatctatagctccaatgcatccttcaaaatgaggccaatacctattatcatctctaattttggatggaatttctaca |
3591151 |
T |
|
| Q |
106 |
aagttaaaatcaggaggcctcacaatttcttttgctagtaaacataaactttctaaaacctcattaaacttcctacttacggtctctccatatttttcaa |
205 |
Q |
| |
|
||||||||||||||||| | |||||||| | |||| |||||||||||| || | ||| ||| |||||||||||||||||||||||| ||||| ||| |
|
|
| T |
3591150 |
aagttaaaatcaggaggtttgacaatttcggtagctaataaacataaactatccagaacttcaccaaacttcctacttacggtctctcctgattttccaa |
3591051 |
T |
|
| Q |
206 |
atttattttgaatatttctattagtctcgctatgcgcacaactccaaagaaacata |
261 |
Q |
| |
|
|||||||||| | ||||| ||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
3591050 |
atttattttggacatttcgattagtctcactatgtgcacaactccaaagaaacata |
3590995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 6 - 307
Target Start/End: Original strand, 9786541 - 9786842
Alignment:
| Q |
6 |
aacaaaggcaagaatatgtgttccatctatagtgccgatgcatccttcaaaataaggccaataccttctatcatccttgattttggacggaatttctgtg |
105 |
Q |
| |
|
||||| |||| ||||||| ||||||||||||| || |||||||||| ||||| |||||||||||| ||||||| | |||||||| ||||||||| |
|
|
| T |
9786541 |
aacaatggcaggaatatgagttccatctatagctccaatgcatccttgaaaatgaggccaatacctattatcatctctaattttggatggaatttctaca |
9786640 |
T |
|
| Q |
106 |
aagttaaaatcaggaggcctcacaatttcttttgctagtaaacataaactttctaaaacctcattaaacttcctacttacggtctctccatatttttcaa |
205 |
Q |
| |
|
||||||||||||||||| | |||||||| | |||| |||||||||||| || | ||| ||| ||||||||||||||| |||||||| ||||| ||| |
|
|
| T |
9786641 |
aagttaaaatcaggaggtttgacaatttcggtagctaataaacataaactatccagaacttcaccaaacttcctacttacagtctctcctgattttccaa |
9786740 |
T |
|
| Q |
206 |
atttattttgaatatttctattagtctcgctatgcgcacaactccaaagaaacataacaagtgcctccaaggatgtcattttgtttgatgggtgcaacca |
305 |
Q |
| |
|
|||||||||| | ||||| ||||||||| || || ||||||||||||||||||||| | |||||||| |||||||||| || ||||| || ||||| |
|
|
| T |
9786741 |
atttattttggacatttcgattagtctcactgtgtgcacaactccaaagaaacatagtcaaagcctccaacgatgtcatttcattagatggatgtaacca |
9786840 |
T |
|
| Q |
306 |
tc |
307 |
Q |
| |
|
|| |
|
|
| T |
9786841 |
tc |
9786842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 43 - 307
Target Start/End: Original strand, 4575638 - 4575902
Alignment:
| Q |
43 |
atgcatccttcaaaataaggccaataccttctatcatccttgattttggacggaatttctgtgaagttaaaatcaggaggcctcacaatttcttttgcta |
142 |
Q |
| |
|
||||| |||||||||| |||||||||||| | ||||| || || ||||| ||| |||||| ||||||||||| |||||||| ||| |||| ||||||| |
|
|
| T |
4575638 |
atgcacccttcaaaatgaggccaatacctacgatcattttttatcttggagggagtttctgcaaagttaaaatctggaggccttacattttcctttgcta |
4575737 |
T |
|
| Q |
143 |
gtaaacataaactttctaaaacctcattaaacttcctacttacggtctctccatatttttcaaatttattttgaatatttctattagtctcgctatgcgc |
242 |
Q |
| |
|
||||||||||||||| ||||| || |||||| ||||| || |||||||| ||||| | |||||||| |||| ||||| |||||| || ||||| || |
|
|
| T |
4575738 |
ataaacataaactttccaaaacttccccaaactttctactcacagtctctcctgattttccgaatttattctgaacatttcgattagtttcactatgtgc |
4575837 |
T |
|
| Q |
243 |
acaactccaaagaaacataacaagtgcctccaaggatgtcattttgtttgatgggtgcaaccatc |
307 |
Q |
| |
|
||| ||||||||||||||||||||| |||||| |||||||||| || ||||| || ||||||| |
|
|
| T |
4575838 |
gcaagtccaaagaaacataacaagtgtctccaatgatgtcatttctttagatggatgtaaccatc |
4575902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 307
Target Start/End: Complemental strand, 7231890 - 7231599
Alignment:
| Q |
17 |
gaatatgtgttccatctatagtgccgatgcatccttcaaaataaggccaataccttctatcatccttg-attttggacggaatttctgtgaagttaaaat |
115 |
Q |
| |
|
||||||||||||||||||| | || ||||| |||||||||| |||||||||||| | ||||| || || || || ||| |||||| ||||||||||| |
|
|
| T |
7231890 |
gaatatgtgttccatctattgcaccaatgcacccttcaaaatgaggccaatacctacgatcatttttttatcttagagggagtttctgcgaagttaaaat |
7231791 |
T |
|
| Q |
116 |
caggaggcctcacaatttcttttgctagtaaacataaactttctaaaacctcattaaacttcctacttacggtctctccatatttttcaaatttattttg |
215 |
Q |
| |
|
| |||||||| |||||||| ||||||| ||||||||||||||| ||||| || |||||| ||||| || |||||||| ||||| | |||||||| || |
|
|
| T |
7231790 |
ccggaggccttacaatttcctttgctaataaacataaactttccaaaacttccccaaactttctactcacagtctctcctgattttccgaatttattctg |
7231691 |
T |
|
| Q |
216 |
aatatttctattagtctcgctatgcgcacaactccaaagaaacataacaagtgcctccaaggatgtcattttgtttgatgggtgcaaccatc |
307 |
Q |
| |
|
|| |||||||||||| || ||||| || ||| ||||||| |||||||||||||||||||| |||||||||| || ||||| || ||||||| |
|
|
| T |
7231690 |
aacatttctattagtttcactatgtgcgcaagtccaaaggaacataacaagtgcctccaatgatgtcatttctttagatggatgtaaccatc |
7231599 |
T |
|
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Target: scaffold0005 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 307
Target Start/End: Original strand, 174903 - 175193
Alignment:
| Q |
17 |
gaatatgtgttccatctatagtgccgatgcatccttcaaaataaggccaataccttctatcatccttgattttggacggaatttctgtgaagttaaaatc |
116 |
Q |
| |
|
|||||||||||| |||||| | || ||||| |||||||||| |||||||||||| | ||||| || || || || ||| ||| || |||||||||||| |
|
|
| T |
174903 |
gaatatgtgttctatctattgcaccaatgcacccttcaaaatgaggccaatacctacgatcattttttatcttagagggagtttttgcgaagttaaaatc |
175002 |
T |
|
| Q |
117 |
aggaggcctcacaatttcttttgctagtaaacataaactttctaaaacctcattaaacttcctacttacggtctctccatatttttcaaatttattttga |
216 |
Q |
| |
|
|||||||| |||||||| ||||||| ||||||||||||||| ||||| || |||||| ||||| || |||||||| ||||| | |||||||| ||| |
|
|
| T |
175003 |
cggaggccttacaatttcctttgctaataaacataaactttccaaaacttccccaaactttctactcacagtctctcctgattttccgaatttattctga |
175102 |
T |
|
| Q |
217 |
atatttctattagtctcgctatgcgcacaactccaaagaaacataacaagtgcctccaaggatgtcattttgtttgatgggtgcaaccatc |
307 |
Q |
| |
|
| ||||| |||||| || ||||| || ||| ||||||| |||||||||||||||||||| |||||||||| || ||||| || ||||||| |
|
|
| T |
175103 |
acatttcaattagtttcactatgtgcgcaagtccaaaggaacataacaagtgcctccaatgatgtcatttctttagatggatgtaaccatc |
175193 |
T |
|
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Target: scaffold0548 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0548
Description:
Target: scaffold0548; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 41 - 153
Target Start/End: Complemental strand, 3559 - 3447
Alignment:
| Q |
41 |
cgatgcatccttcaaaataaggccaataccttctatcatccttgattttggacggaatttctgtgaagttaaaatcaggaggcctcacaatttcttttgc |
140 |
Q |
| |
|
|||| |||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3559 |
cgatacatctttcaaaataaggccagtaccttctatcatctttgattttggacggaatttctgtaaagttaaaatcaggaggcctcacaatttcttttgc |
3460 |
T |
|
| Q |
141 |
tagtaaacataaa |
153 |
Q |
| |
|
||||||||||||| |
|
|
| T |
3459 |
tagtaaacataaa |
3447 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 17 - 286
Target Start/End: Complemental strand, 29565682 - 29565413
Alignment:
| Q |
17 |
gaatatgtgttccatctatagtgccgatgcatccttcaaaataaggccaataccttctatcatccttgattttggacggaatttctgtgaagttaaaatc |
116 |
Q |
| |
|
||||||||||||||||||| | || ||||| |||||||||| || ||||||||| | ||||| || || || || ||| |||||| ||||| |||||| |
|
|
| T |
29565682 |
gaatatgtgttccatctattgcaccaatgcacccttcaaaatgagaccaatacctacgatcattttttatcttagagggagtttctgcgaagtcaaaatc |
29565583 |
T |
|
| Q |
117 |
aggaggcctcacaatttcttttgctagtaaacataaactttctaaaacctcattaaacttcctacttacggtctctccatatttttcaaatttattttga |
216 |
Q |
| |
|
|||||||| |||||||| ||||||| ||||||||||||||| | ||| || |||||| ||||| || |||||||| ||||| | |||||||| ||| |
|
|
| T |
29565582 |
cggaggccttacaatttcctttgctaataaacataaactttccacaacttccccaaactttctactcacagtctctcctgattttccgaatttattctga |
29565483 |
T |
|
| Q |
217 |
atatttctattagtctcgctatgcgcacaactccaaagaaacataacaagtgcctccaaggatgtcattt |
286 |
Q |
| |
|
| ||||| |||||| || ||||| | ||| ||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
29565482 |
acatttcgattagtttcactatgtgtgcaagtccaaaggaacataacaagtgcctccaatgatgtcattt |
29565413 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 21 - 307
Target Start/End: Complemental strand, 132311 - 132025
Alignment:
| Q |
21 |
atgtgttccatctatagtgccgatgcatccttcaaaataaggccaataccttctatcatccttgattttggacggaatttctgtgaagttaaaatcagga |
120 |
Q |
| |
|
|||||||| |||||| | || ||||| |||||||||| |||||||||||| | ||||| || || || || ||| |||||| ||||||||||| ||| |
|
|
| T |
132311 |
atgtgttctatctattgcaccaatgcacccttcaaaatgaggccaatacctacgatcattttttatcttagagggagtttctgctaagttaaaatccgga |
132212 |
T |
|
| Q |
121 |
ggcctcacaatttcttttgctagtaaacataaactttctaaaacctcattaaacttcctacttacggtctctccatatttttcaaatttattttgaatat |
220 |
Q |
| |
|
||||| |||||||| ||||||| ||||||||||||||| ||||| || |||||| ||||| || ||||||| ||||| | |||||||| |||| || |
|
|
| T |
132211 |
ggccttacaatttcctttgctaataaacataaactttccaaaacttccccaaactttctactcacagtctctcttgattttccgaatttattctgaacat |
132112 |
T |
|
| Q |
221 |
ttctattagtctcgctatgcgcacaactccaaagaaacataacaagtgcctccaaggatgtcattttgtttgatgggtgcaaccatc |
307 |
Q |
| |
|
||| |||||| || ||||| || ||| ||||||| |||||||||| | ||||||| |||||||||| || ||||| || ||||||| |
|
|
| T |
132111 |
ttcgattagtttcactatgtgcgcaagtccaaaggaacataacaattacctccaatgatgtcatttctttagatggatgtaaccatc |
132025 |
T |
|
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