View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5768_low_20 (Length: 292)
Name: NF5768_low_20
Description: NF5768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5768_low_20 |
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| [»] scaffold0092 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 280
Target Start/End: Original strand, 10784270 - 10784540
Alignment:
| Q |
17 |
attttgcacatgagtttctttgcaccaaatactagcatagctcaatattaaaaattggagatcccgctcaaatattaaatacggactcctgatataaaaa |
116 |
Q |
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| T |
10784270 |
attttgcacatgagtttctttgcaccaaata---gcatagctcaatattaaaaattggagatcccgctcaaatattatatacggactcctgatataaaaa |
10784366 |
T |
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| Q |
117 |
tgtatttt---ttaaaaggaattatcatttatttaaacttcaaataacataaaattaaggttaggcaaacaatagtcatctttataaac-------taag |
206 |
Q |
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| T |
10784367 |
tgtatttttttttaaaaggaattatcatttatttaaactgcaaataacataaaatcaaggttaggcttacaatagtcatctttataaactaagtaataag |
10784466 |
T |
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| Q |
207 |
taaaaagtaagtttgtatgggagtaactaactaatttttgttgagcttcattaaccacaataagtattctgatg |
280 |
Q |
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| T |
10784467 |
taaaaagtaagtttgtatgggagtaactaactagtttttgttgagcttcattaaccactataattgttctgatg |
10784540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 280
Target Start/End: Complemental strand, 50507214 - 50506951
Alignment:
| Q |
17 |
attttgcacatgagtttctttgcaccaaatactagcatagctcaatattaaaaattggagatcccgctcaaatattaaatacggactcctgatataaaaa |
116 |
Q |
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| T |
50507214 |
attttgcacatgagtttctttgcaccaaata---gcatagttcaatattaaaaattggagatccaactcaaatattaaatacaaactcctaataaaaaaa |
50507118 |
T |
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| Q |
117 |
-tgtattttttaaaaggaattatcatttatttaaacttcaaataacataaaattaaggttaggcaaacaatagtcatctttataaactaagtaaa---aa |
212 |
Q |
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| T |
50507117 |
atgtattttttaaaagaaaatatcatttatttaaaccgtaaataacataaacttaaggctaggctaacaatagtcatctttataaactaagtaaaagtaa |
50507018 |
T |
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| Q |
213 |
gtaagtttgtatgggagtaactaactaatttttgttgagcttcattaaccacaataagtattctgatg |
280 |
Q |
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| T |
50507017 |
gtaa-tttgtacgggagtaactaactaatttttgttgagttccattaaccactataattgttctgatg |
50506951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 12704673 - 12704733
Alignment:
| Q |
195 |
ttataaactaagtaaaaagtaagtttgtatgggagtaactaactaatttttgttgagcttca |
256 |
Q |
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| T |
12704673 |
ttataaattaagtaaaa-gtaagtttgtatggtaggaactaactaacttgtgttgagtttca |
12704733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 264
Target Start/End: Complemental strand, 9206961 - 9206911
Alignment:
| Q |
214 |
taagtttgtatgggagtaactaactaatttttgttgagcttcattaaccac |
264 |
Q |
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| T |
9206961 |
taagtttgtatgggaggaactaactaacttgtgttgaacttcactaaccac |
9206911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 56220874 - 56220830
Alignment:
| Q |
195 |
ttataaactaagtaaaaagtaagtttgtatgggagtaactaactaa |
240 |
Q |
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| T |
56220874 |
ttataaattaagtaaaaa-taagtttgtatgggaggaactaactaa |
56220830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 8509446 - 8509495
Alignment:
| Q |
214 |
taagtttgtatgggagtaactaactaatttttgttgagcttcattaacca |
263 |
Q |
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| T |
8509446 |
taagtttgtatgggagaaactaactaacctgtgttgagcttcactaacca |
8509495 |
T |
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Target: scaffold0092 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0092
Description:
Target: scaffold0092; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 44891 - 44927
Alignment:
| Q |
204 |
aagtaaaaagtaagtttgtatgggagtaactaactaa |
240 |
Q |
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| T |
44891 |
aagtaaaaagtaagtttgtatgggaagaactaactaa |
44927 |
T |
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