View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5768_low_24 (Length: 244)
Name: NF5768_low_24
Description: NF5768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5768_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 39293738 - 39293517
Alignment:
| Q |
1 |
taaaatcaataactattatcccaaaattataggccagtttggaaatatatgcctctttattgagaatacatgataatagttaataaactaagaatgaccc |
100 |
Q |
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| T |
39293738 |
taaaatcaataactattatcccaaaattataggccaatttgaaaatatatgcctctttattgagaatacatgataatagttaataaactaagaatgaccc |
39293639 |
T |
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| Q |
101 |
ctcaaaataaaaactaagaatgagtaaaataggattcaaagttgatttcgcctattttatatgaattaattaaattaaagtgataatgggcaggttaaac |
200 |
Q |
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| T |
39293638 |
ctcaaaataaaaactaagaatgagtaaaataggattcaaagttgatttcgcctattttatatgaattaattaaattaaagtgataatgggcaggttaaac |
39293539 |
T |
|
| Q |
201 |
taatcggaagagacaccttcca |
222 |
Q |
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| T |
39293538 |
caatcggaagagacaccttcca |
39293517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 39293774 - 39293739
Alignment:
| Q |
47 |
atatgcctctttattgagaatacatgataatagtta |
82 |
Q |
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| T |
39293774 |
atatgcctctttattgagaatacatgataatagtta |
39293739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 47 - 229
Target Start/End: Original strand, 8357952 - 8358134
Alignment:
| Q |
47 |
atatgcctctttattgagaatacatgataatagttaataaactaagaatgacccctcaaaataaaaactaagaatgagtaaaataggattcaaagttgat |
146 |
Q |
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| T |
8357952 |
atatgcctctttattgagaatacatgataatagttaataaactaagaatgacccctcaaaataaaaactaagaatgagtaaaataggattcaaagttggt |
8358051 |
T |
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| Q |
147 |
ttcgcctattttatatgaattaattaaattaaagtgataatgggcaggttaaactaatcggaagagacaccttccatgtattt |
229 |
Q |
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| T |
8358052 |
ttcgcctattttatatgaattaattaaattaaagtgataatgggcaggttaaactaataggaagagacaccttccatgtattt |
8358134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 104 - 229
Target Start/End: Complemental strand, 10068577 - 10068447
Alignment:
| Q |
104 |
aaaataaaaactaagaatgagtaaaataggattcaaagttgatttcgcctatttt-atatgaattaat----taaattaaagtgataatgggcaggttaa |
198 |
Q |
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||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||| ||| ||||||||||||||| ||| |||||||| |
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| T |
10068577 |
aaaataaaaactaagaatgagtaaactaggattcaaaattgatttcgccaattttcatatgaatcaatcaattaaattaaagtgatattggacaggttaa |
10068478 |
T |
|
| Q |
199 |
actaatcggaagagacaccttccatgtattt |
229 |
Q |
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| T |
10068477 |
actaattggaagagacaccttccatgtattt |
10068447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 80 - 228
Target Start/End: Complemental strand, 10063118 - 10062967
Alignment:
| Q |
80 |
ttaataaactaagaatgacccctcaaaataaaaa-----ctaagaatgagtaaaataggattcaaagttgatttcgcctattttatatgaattaattaaa |
174 |
Q |
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|||||||||||| |||||||||||||| ||||| ||||||||||||| | |||||||| || |||||||| || | ||| | || ||||||| |
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| T |
10063118 |
ttaataaactaaaaatgacccctcaaataaaaaattaaactaagaatgagtatactaggattcgaaattgatttccccgaattttctt--atgaattaaa |
10063021 |
T |
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| Q |
175 |
ttaaagtgataatgggcaggttaaactaatcggaagagacaccttccatgtatt |
228 |
Q |
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|||||||||| ||||| ||||| ||||||||| ||||||||| ||||||||||| |
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| T |
10063020 |
ttaaagtgatgatgggaaggttgaactaatcgaaagagacacattccatgtatt |
10062967 |
T |
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