View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5768_low_26 (Length: 243)
Name: NF5768_low_26
Description: NF5768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5768_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 26881387 - 26881616
Alignment:
| Q |
1 |
acaaggtcttcattgattcaaattagatatacgtacaagaaaatgtgtaattactaattagtggcattcacactacttagtcaagaactgtctattatcc |
100 |
Q |
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| T |
26881387 |
acaaggtcttcattgattcaaattagatatacgtacaagaaaatgtgtaattactaattagtgacattcacactacttagtcaagaactgtctattatcc |
26881486 |
T |
|
| Q |
101 |
ttctttgtcttatgagaaatattataatttttcaataactaaagcactttccacatatgtgtcttctttttctcgtcctaa---ttgttgtttggttttg |
197 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26881487 |
ttctttgtcttatgagaaatattataatttttccataactaaagcactttccacatatgtgtcttctttttctcgtcctaattgttgttgtttggttttg |
26881586 |
T |
|
| Q |
198 |
ttggattttctacaaattctatttattaag |
227 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
26881587 |
ttggattttctacaaattctatttattaag |
26881616 |
T |
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