View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5768_low_27 (Length: 242)
Name: NF5768_low_27
Description: NF5768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5768_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 11675391 - 11675599
Alignment:
| Q |
16 |
atccataaagccctcgaattccatatccgaatcatatgactccttagccacttcaagtgtgaaggatgtaagagaactaccctcagttgaaataccttga |
115 |
Q |
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| T |
11675391 |
atccataaagccctcgaattccatatccgaatcatatgactccttagccacttcaagtgtaaaggatgtaagagaaccaccctcagttgaaataccttga |
11675490 |
T |
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| Q |
116 |
atttccctaaaaagttttcctattacattctttgatttgtaggtggttttgtcaggcttttccatgaagtctggatattctttggcgaaaagatgagggg |
215 |
Q |
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| T |
11675491 |
atttccctaaaaagttttcctattacattctttgatttgtaggtggttttgtcaggcttttccatgaagtctggatattctttggcgaaaagatgagggg |
11675590 |
T |
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| Q |
216 |
gtataactg |
224 |
Q |
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||||||||| |
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| T |
11675591 |
gtataactg |
11675599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 11682878 - 11683058
Alignment:
| Q |
16 |
atccataaagccctcgaattccatatccgaatcatatgactccttagccacttcaagtgtgaaggatgtaagagaactaccctcagttgaaataccttga |
115 |
Q |
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| T |
11682878 |
atccataaagcccacgaattccatatctggatcatgtgactctttagccacttcaagtgtgaaggatgtaatagaaccgtcatttgttgaaataccttga |
11682977 |
T |
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| Q |
116 |
atttccctaaaaagttttcctattacattctttgatttgtaggtggttttgtcaggcttttccatgaagtctggatattct |
196 |
Q |
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| T |
11682978 |
atttccctaaaaagttttcctattacattctttgatttgtaggtggttttgtcaggcttttccatgaagtctggatattct |
11683058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 101 - 224
Target Start/End: Original strand, 11683060 - 11683183
Alignment:
| Q |
101 |
gttgaaataccttgaatttccctaaaaagttttcctattacattctttgatttgtaggtggttttgtcaggcttttccatgaagtctggatattctttgg |
200 |
Q |
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| T |
11683060 |
gttgaaataccttgaatttccctaaaaagttttcctattacattctttgatttgtaggtggttttgtcaggcttttccatgaagtctggatattctttgg |
11683159 |
T |
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| Q |
201 |
cgaaaagatgagggggtataactg |
224 |
Q |
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| T |
11683160 |
caaaaagatgaggaggtataactg |
11683183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 11631250 - 11631058
Alignment:
| Q |
16 |
atccataaagccctcgaattccatatccgaatcatatgactccttagccacttcaagtgtgaaggatgtaagagaactaccctcagttgaaataccttga |
115 |
Q |
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|||||||||||||||||||||||| || |||||||| ||||| ||||||||||| | |||||| ||||||| ||| | ||| ||||||||||||||| |
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| T |
11631250 |
atccataaagccctcgaattccatgtcggaatcataggactctttagccacttccaatgtgaaagatgtaatagagccgtcctttgttgaaataccttga |
11631151 |
T |
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| Q |
116 |
atttccctaaaaagttttcctattacattctttgatttgtaggtggttttgtcaggcttttccatgaagtctggatattctttggcgaaaaga |
208 |
Q |
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| T |
11631150 |
atttccctaaaaagttttcctattacattctttgatttgtagataggtttgtcaggcttctccatgaaatctggatattctgtggggaaaaga |
11631058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 11640012 - 11639821
Alignment:
| Q |
16 |
atccataaagccctcgaattccatatccgaatcatatgactccttagccacttcaagtgtgaaggatgtaagagaactaccctcagttgaaataccttga |
115 |
Q |
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||||||||| || || | |||||| || | ||||||||||| ||||||||||| |||||||||||||||| || | ||| |||||||| |||||| |
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| T |
11640012 |
atccataaatccatcaacttccatgtcgggatcatatgactttttagccacttccagtgtgaaggatgtaatggagccgtcctttgttgaaattccttga |
11639913 |
T |
|
| Q |
116 |
atttccctaaaaagttttcctattacattctttgatttgtaggtggttttgtcaggcttttccatgaagtctggatattctttggcgaaaag |
207 |
Q |
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| T |
11639912 |
atttccctaaacagttttcctattacattatctgatttgtatgttgttttgtcagccttctccatgaaatctggatattctttggcgaaaag |
11639821 |
T |
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