View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5768_low_29 (Length: 227)
Name: NF5768_low_29
Description: NF5768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5768_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 12096173 - 12095962
Alignment:
| Q |
1 |
agccaccttagggcttaataacaaccaattaaccggtccaattcctgcttacctcggccgccttcctaaactccaaggactagacttgtatgacaaccat |
100 |
Q |
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| T |
12096173 |
agccaccttagggcttaataacaaccaattaaccggtccaattcctgcttacctcggccgccttcctaaactccaaggactagacttgtacgacaaccat |
12096074 |
T |
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| Q |
101 |
ttaaccggtccaataccggacagcttcggatcattcaaggctggttctcaggtcactttgtccaacaacatgttatccggaccaatcccaagatcgttgg |
200 |
Q |
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| T |
12096073 |
ttaaccggtccaataccggacagcttcggatcattcaaggccggttctcaggtcactttgtccaacaacatgttatccggaccaatcccaagatcgttgg |
12095974 |
T |
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| Q |
201 |
gcacagttaatt |
212 |
Q |
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||| |||||||| |
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| T |
12095973 |
gcaaagttaatt |
12095962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 12079533 - 12079322
Alignment:
| Q |
1 |
agccaccttagggcttaataacaaccaattaaccggtccaattcctgcttacctcggccgccttcctaaactccaaggactagacttgtatgacaaccat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||| ||||||||| |
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| T |
12079533 |
agccaccttagggcttaataacaaccaattaaccggtccaattccagcttacctcggccgccttcctaaactacaaggactaaacttgtacgacaaccat |
12079434 |
T |
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| Q |
101 |
ttaaccggtccaataccggacagcttcggatcattcaaggctggttctcaggtcactttgtccaacaacatgttatccggaccaatcccaagatcgttgg |
200 |
Q |
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| T |
12079433 |
ttaaccggtccaataccggacagcttcggatcattcaaggccggttctcaggtcactttgtccaacaacatgttatccggaccaatcccaagatcgttgg |
12079334 |
T |
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| Q |
201 |
gcacagttaatt |
212 |
Q |
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|||||||||||| |
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| T |
12079333 |
gcacagttaatt |
12079322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 1249093 - 1249161
Alignment:
| Q |
1 |
agccaccttagggcttaataacaaccaattaaccggtccaattcctgcttacctcggccgccttcctaa |
69 |
Q |
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|||||| |||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||| |
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| T |
1249093 |
agccactttagggcttaataacaaccatttaaccggtcgggttccggcttacctcggccgccttcctaa |
1249161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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