View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5768_low_30 (Length: 224)

Name: NF5768_low_30
Description: NF5768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5768_low_30
NF5768_low_30
[»] chr3 (3 HSPs)
chr3 (140-207)||(28902998-28903065)
chr3 (18-80)||(28903125-28903187)
chr3 (140-207)||(28936263-28936329)
[»] chr5 (1 HSPs)
chr5 (152-207)||(34009920-34009975)


Alignment Details
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 28903065 - 28902998
Alignment:
Q  140 aaaacaacaaacatgttctatttttctctgaaaaagaatcctagattgtccaacaggttcctcactgt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28903065 aaaacaacaaacatgttctatttttctctgaaaaagaatcctagattgtccaacaggttcctcactgt 28902998  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 28903187 - 28903125
Alignment:
Q  18 aggcactggttctctgtgtttgtttttgttactttggtctctgttttgaaaacaccttgcaag 80  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28903187 aggcactggttctttgtgtttgtttttgttactttggtctctgttttgaaaacaccttgcaag 28903125  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 28936329 - 28936263
Alignment:
Q  140 aaaacaacaaacatgttctatttttctctgaaaaagaatcctagattgtccaacaggttcctcactgt 207  Q
    |||||| ||||||||||||||| | || |||||||||||||||||||| ||||| ||||| |||||||    
T  28936329 aaaacagcaaacatgttctattat-ctttgaaaaagaatcctagattgcccaactggttcatcactgt 28936263  T

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Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 34009975 - 34009920
Alignment:
Q  152 atgttctatttttctctgaaaaagaatcctagattgtccaacaggttcctcactgt 207  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||    
T  34009975 atgttctatttatctttgaaaaagaatcctagattgtccaacaggttccttactgt 34009920  T

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