View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5768_low_6 (Length: 560)
Name: NF5768_low_6
Description: NF5768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5768_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 16 - 545
Target Start/End: Complemental strand, 40030240 - 40029717
Alignment:
| Q |
16 |
aaaaaggtatatttgctagcttcaaaaacaagtaaagaagaaaatttgaacatgcaaaattatagtatgtgcttatcttgtttgcaaaccccatagaatt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40030240 |
aaaaaggtatatttgctagcttcaaaaacaagtaaagaagaaaatttgagtatgcaaaattctagtatgtgcttatcttgtttgcaaaccccatagaatt |
40030141 |
T |
|
| Q |
116 |
aataaagctaagctcaattttcataattaaatatcatcaacacatccattttatcatgttgtgttgactaagctactttttctttcttaattaaatattc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40030140 |
aataaagctaagctcaattttcataattaaatatca---acacatccattttatcatgttg-----actaagctactttttctttcttaattaaatattc |
40030049 |
T |
|
| Q |
216 |
attcagttaggacttaagagacacgcattctgcgtttatttcttctaatttctcccttacattgttgaaattgttagcagtattatgctgagtggggata |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40030048 |
attcagttaggacttaagagacacgcattctgcgtttatttcttctaatttctcccttacattgttgaaattgttagcagtattatgctgagtggggata |
40029949 |
T |
|
| Q |
316 |
ttgaactttggacctccttatcaaattactttcatttcacatatataattgattgataagggtacgtgttatatatggatatggagatttctttctccta |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
40029948 |
ttgaactttggacctccttatcaaattactttcatttcacatatataattgattgataagggtacgtgttatatatggatatggagatttctttctccca |
40029849 |
T |
|
| Q |
416 |
aacttaccttcattaacaacatatatagttcctctt--nnnnnnnnnngttaggaaggaaaatctcatcaacaaataattaaaataaagcaactttatat |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40029848 |
aacttaccttcattaacaacatatatagttcctcttaaaaaaaaaaaagttaggaaggaaaatctcatcaacaaataattaaaataaagcaactttatat |
40029749 |
T |
|
| Q |
514 |
ggagttgccaatttctatttcagatcctccct |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
40029748 |
ggagttgccaatttctatttcagatcctccct |
40029717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University