View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5768_low_7 (Length: 504)
Name: NF5768_low_7
Description: NF5768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5768_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 8 - 404
Target Start/End: Original strand, 32550472 - 32550868
Alignment:
| Q |
8 |
catatgttgatattatttcgccaatccacacaattcaaatcataaaattcatcgacaaccctaatcctaaagacagtgttctcaatgaatttcgctcgac |
107 |
Q |
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| T |
32550472 |
catatgttgatattatttcgccaatccacacaattcaaatcataaaattcatcgacaaccctaatcctaaagacagtgttctcaatgaatttcgctcgac |
32550571 |
T |
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| Q |
108 |
cacttacaatagcccgtcaaatcaacaaacaccaacaatgcagaaccaatccacactaacctcagctgacaattttgcctctaaccgcagatcaggcttc |
207 |
Q |
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| T |
32550572 |
cacttacaatagcccgtcaaatcaacaaacaccaacaatgcagaaccaatccacactaacctcagctgacaattttgcctctaaccgcagatcaggcttc |
32550671 |
T |
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| Q |
208 |
ggtgtaacaactttatcgaaatcagacaaaacgttccgcgaagttgaccccataattccattagctatagaggttttttcattagtcttctttccactag |
307 |
Q |
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| T |
32550672 |
ggtgtaacaactttatcgaaatcagacaaaacattccgcgaagttgaccccataattccattagctatagaggttttttcattagtcttctttccactag |
32550771 |
T |
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| Q |
308 |
cacttttctttggtgtggcactctgttaatgtacacacaaataaaaataactagattcaaactaaatactatatgaatttgaataacaccatgatat |
404 |
Q |
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| T |
32550772 |
cacttttctttggtgtggcactctgttaatgtacacacaaataaaaataactaaattcaaactcaatactgtatgaatttgaataacaccatgatat |
32550868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 431 - 494
Target Start/End: Original strand, 32550895 - 32550958
Alignment:
| Q |
431 |
gaggaccactaaccttagaacctttatttaacggagtaatttttcctttggattttctcttcct |
494 |
Q |
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| T |
32550895 |
gaggaccactgaccttagaacctttatttaacggagtaatttttcctttggattttctcttcct |
32550958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 10573284 - 10573325
Alignment:
| Q |
160 |
acactaacctcagctgacaattttgcctctaaccgcagatca |
201 |
Q |
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| T |
10573284 |
acactaacctcagctgacaatttcgcctccaaccgcaaatca |
10573325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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