View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5768_low_8 (Length: 462)
Name: NF5768_low_8
Description: NF5768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5768_low_8 |
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| [»] chr3 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 12 - 462
Target Start/End: Complemental strand, 39294188 - 39293739
Alignment:
| Q |
12 |
catcatcaacgtaattttaaaactcatataagttcatgtaagaaaggacactctgaaggaaacgcttacataagcactcattttaggtcaaggtccatta |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39294188 |
catcatcaacgtaattttaaaactcatataagttcatgtaagaaaggacacgctgaaggaaatgcttacataagcactcattttaggtcaaggtccatta |
39294089 |
T |
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| Q |
112 |
tgaaaggcctcacgagctgctgaaactgcacggttaatatcttcagcatcaccttcagcaacgtgagcaatcacttcccctgtgcgtggatcaagtgttg |
211 |
Q |
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||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39294088 |
tgaaaggcctcgcaagctgctgaaactgcacggttaatatcttcagcatcaccttcagcaacgtgagcaatcacttcccctgtgcgtggatcaagtgttg |
39293989 |
T |
|
| Q |
212 |
gaaatgttttccctgaaatcaaaagaaactccatgtttaatctaagagcgtaacttgttctcacttccattcaatacatgannnnnnncggcactcctat |
311 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
39293988 |
gaaatgttttccctgaaatcaaaag-aactccatgtttaatctaagagcgtaacttgttctcacttccatttaatacatgatttttttgggcactcctat |
39293890 |
T |
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| Q |
312 |
gaaaggtttgaattataggccgttcttgataaagcctaatctcagttaaaaaacccgaatgaacccaggatagtttggttataatattatctcgtcacga |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39293889 |
gaaaggtttgaattataggccgttcttgataaagcctaatctcagttaaaaaacccgaatgaacccaggatagtttggttataatattatctcttcacga |
39293790 |
T |
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| Q |
412 |
gcatatagatagttaatatgcctctttattgagaatacatgataatagtta |
462 |
Q |
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| T |
39293789 |
gcatatagatagttaatatgcctctttattgagaatacatgataatagtta |
39293739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 427 - 462
Target Start/End: Complemental strand, 39293692 - 39293657
Alignment:
| Q |
427 |
atatgcctctttattgagaatacatgataatagtta |
462 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
39293692 |
atatgcctctttattgagaatacatgataatagtta |
39293657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 35212746 - 35212811
Alignment:
| Q |
126 |
agctgctgaaactgcacggttaatatcttcagcatcaccttcagcaacgtgagcaatcacttcccc |
191 |
Q |
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|||||| || |||||||| || |||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
35212746 |
agctgcagatactgcacgattgatatcttcttgatcaccttcagcaacatgagcaatcacttcccc |
35212811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 12 - 462
Target Start/End: Original strand, 8357538 - 8357987
Alignment:
| Q |
12 |
catcatcaacgtaattttaaaactcatataagttcatgtaagaaaggacactctgaaggaaacgcttacataagcactcattttaggtcaaggtccatta |
111 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||| |
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| T |
8357538 |
catcatcaacgtaattttaaaactaatataagttcatgtaagaaaggacactctgaaggaaatgcttacataagcattcattttaggccaaggtccatta |
8357637 |
T |
|
| Q |
112 |
tgaaaggcctcacgagctgctgaaactgcacggttaatatcttcagcatcaccttcagcaacgtgagcaatcacttcccctgtgcgtggatcaagtgttg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8357638 |
tgaaaggcctcacgagctgctgaaactgcacggttaatatcttcagcatcaccttcagcaacgtgagcaatcacttcccctgtgcgtggatcaagtgttg |
8357737 |
T |
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| Q |
212 |
gaaatgttttccctgaaatcaaaagaaactccatgtttaatctaagagcgtaacttgttctcacttccattcaatacatgannnnnnncggcactcctat |
311 |
Q |
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| T |
8357738 |
gaaatgttttccctgaaatcaaaa-aaactccatgtttaatctaagagcgtaatttgttctcacttccattcaatacatgatttttttgtgcactcctat |
8357836 |
T |
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| Q |
312 |
gaaaggtttgaattataggccgttcttgataaagcctaatctcagttaaaaaacccgaatgaacccaggatagtttggttataatattatctcgtcacga |
411 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
8357837 |
gaaaggtttgaattataggccgttcttgacaaagcctaatctcagttaaaaaacccgaatgaacctaggatagtttggttataatattatctcttcacga |
8357936 |
T |
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| Q |
412 |
gcatatagatagttaatatgcctctttattgagaatacatgataatagtta |
462 |
Q |
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| T |
8357937 |
gcatataaatagttaatatgcctctttattgagaatacatgataatagtta |
8357987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 292
Target Start/End: Original strand, 44000094 - 44000373
Alignment:
| Q |
13 |
atcatcaacgtaattttaaaactcatataagttcatgtaagaaaggacactctgaaggaaacgcttacataagcactcattttaggtcaaggtccattat |
112 |
Q |
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||||||||||||| || |||||| ||| ||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
44000094 |
atcatcaacgtaaattgaaaactaatagaagttcatgcaagaaaggacactctgcaggaaatgcttacataagcactcattttaggccaaggtccattat |
44000193 |
T |
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| Q |
113 |
gaaaggcctcacgagctgctgaaactgcacggttaatatcttcagcatcaccttcagcaacgtgagcaatcacttcccctgtgcgtggatcaagtgttgg |
212 |
Q |
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| T |
44000194 |
caaaggcctcacgagctgctgaaactgcacggttaatatcttcagcatcaccttcagcaacatgagcaatcacttcccctgtgcgtggatcaagtgttgg |
44000293 |
T |
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| Q |
213 |
aaatgttttccctgaaatcaaaagaaactccatgtttaatctaagagcgtaacttgttctcacttccattcaatacatga |
292 |
Q |
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|||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||| |||| |
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| T |
44000294 |
aaatgttttccctggaatcaaaagaaactccgtgtttaatctaagagcctaacttgttctcacttccactcaataaatga |
44000373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 26894437 - 26894376
Alignment:
| Q |
166 |
tcagcaacgtgagcaatcacttcccctgtgcgtggatcaagtgttggaaatgttttccctga |
227 |
Q |
| |
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|||||||| |||||||||||||||||||| | |||||| | ||||||||||||||| ||||| |
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| T |
26894437 |
tcagcaacatgagcaatcacttcccctgtccttggatccaatgttggaaatgttttacctga |
26894376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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