View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5768_low_9 (Length: 429)
Name: NF5768_low_9
Description: NF5768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5768_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Original strand, 21620245 - 21620648
Alignment:
| Q |
18 |
gaatgaacacgactaggtttgaccattttggtttttccagcttattgtattttgacccagtagttgttcttgtactgttcaatcaatctaaagtcgaatt |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
21620245 |
gaatgaacacgactaggtttgaccattttggtttttccggcttattgtattttgacccagtagttgttcttgtactgttcaatcaatctaaagtcgaaat |
21620344 |
T |
|
| Q |
118 |
atttctttcttttgtcgaatttccgtctatcttctttgcttaaccgatttcaattataattaaaatgatccatcaaaaccaaaatctattgaaaattgtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21620345 |
atttctttcttttgtcgaatttccgtctatcttctttgcttaaccgatttcaattataattaaaatgatccatcaaaaccaaaatctattgaaaattgtt |
21620444 |
T |
|
| Q |
218 |
gttgacacttcaaattaggctaaaacaatgaaagtcatttcccactggacgaagttggttacatggattgaacaacactgttaccccgatatctaatcaa |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
21620445 |
gttgacacttcaaattaggctaaaacaatgaaagtcatttcccactggatgaagttggttacatggattgaacaacactgttaccctgatatctaatcaa |
21620544 |
T |
|
| Q |
318 |
gttcaacaactaattataaacaaagttcatgctcctaccaagccaaatgcactagacaattactccaaaaagtaagtgtttatcaatactccttggttca |
417 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21620545 |
gttcaacaactaattataaacaaaattcatgctcctaccaagccaaatgcactagacaattactccaaaaagtaagtgtttatcaatactccttggttca |
21620644 |
T |
|
| Q |
418 |
tctc |
421 |
Q |
| |
|
|||| |
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|
| T |
21620645 |
tctc |
21620648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Original strand, 21641647 - 21642050
Alignment:
| Q |
18 |
gaatgaacacgactaggtttgaccattttggtttttccagcttattgtattttgacccagtagttgttcttgtactgttcaatcaatctaaagtcgaatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| | |
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| T |
21641647 |
gaatgaacacgactaggtttgaccattttggtttttccggcttattgtattttgacccagtagttggtcttgtactgtttaatcaatctaaagtcgaaat |
21641746 |
T |
|
| Q |
118 |
atttctttcttttgtcgaatttccgtctatcttctttgcttaaccgatttcaattataattaaaatgatccatcaaaaccaaaatctattgaaaattgtt |
217 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21641747 |
atttctttcttttgtcaaatttccgtctatcttctttgcttaaccgatttcaattataattaaaatgatccatcaaaaccaaaatctattgaaaattgtt |
21641846 |
T |
|
| Q |
218 |
gttgacacttcaaattaggctaaaacaatgaaagtcatttcccactggacgaagttggttacatggattgaacaacactgttaccccgatatctaatcaa |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21641847 |
gttgacacttcaaattaggctaaaacaatgaaagtcatttcccaccggatgaagttggttacatggattgaacaacaccgttaccccgatatctaatcaa |
21641946 |
T |
|
| Q |
318 |
gttcaacaactaattataaacaaagttcatgctcctaccaagccaaatgcactagacaattactccaaaaagtaagtgtttatcaatactccttggttca |
417 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
21641947 |
gttcaacaactaattataaacaaaactcatgctcctaccaagccaaattcactagacaattactccaaaaagtaagtgtttatcaatacttcttggttca |
21642046 |
T |
|
| Q |
418 |
tctc |
421 |
Q |
| |
|
|||| |
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|
| T |
21642047 |
tctc |
21642050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 299 - 421
Target Start/End: Complemental strand, 30400183 - 30400062
Alignment:
| Q |
299 |
taccccgatatctaatcaagttcaacaactaattataaacaaagttcatgctcctaccaagccaaatgcactagacaattactccaaaaagtaagtgttt |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30400183 |
taccccgatatctaatcaagttcaacaactaattataaacaaaat-catgctcctaccaagccaaatgcactagacaattactccataaagtaagtgttt |
30400085 |
T |
|
| Q |
399 |
atcaatactccttggttcatctc |
421 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
30400084 |
atcaatactccttggttcatctc |
30400062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 298 - 376
Target Start/End: Original strand, 30400814 - 30400892
Alignment:
| Q |
298 |
ttaccccgatatctaatcaagttcaacaactaattataaacaaagttcatgctcctaccaagccaaatgcactagacaa |
376 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
30400814 |
ttaccccgatatctaatcaagttcaataactaattataaacaaaattcatgctcctaccaagccaaatgcactagacaa |
30400892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 153 - 211
Target Start/End: Original strand, 30400500 - 30400558
Alignment:
| Q |
153 |
ttgcttaaccgatttcaattataattaaaatgatccatcaaaaccaaaatctattgaaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30400500 |
ttgcttaaccgatttcaattataattaaaatgatccatcaaaaccaaattctattgaaa |
30400558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 238 - 302
Target Start/End: Original strand, 30400559 - 30400623
Alignment:
| Q |
238 |
taaaacaatgaaagtcatttcccactggacgaagttggttacatggattgaacaacactgttacc |
302 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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|
| T |
30400559 |
taaaacaatgaaagtcatttcccactcaacgaagttggttacatggattgaacaacaccgttacc |
30400623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 43 - 129
Target Start/End: Original strand, 17989246 - 17989332
Alignment:
| Q |
43 |
ttttggtttttccagcttattgtattttgacccagtagttgttcttgtactgttcaatcaatctaaagtcgaattatttctttcttt |
129 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||| | |||||| ||||||||| |||| ||||||||| ||||||||||||| |
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| T |
17989246 |
ttttggttttttcgacttattgtattttgacccagtagtcggtcttgtgctgttcaattaatcaaaagtcgaaatatttctttcttt |
17989332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 293
Target Start/End: Complemental strand, 53944807 - 53944769
Alignment:
| Q |
255 |
tttcccactggacgaagttggttacatggattgaacaac |
293 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||| |
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|
| T |
53944807 |
tttcccactagacgaagttggttacattgattgaacaac |
53944769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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