View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5769-Insertion-1 (Length: 293)
Name: NF5769-Insertion-1
Description: NF5769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5769-Insertion-1 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 40021522 - 40021383
Alignment:
| Q |
8 |
ataatttggtttcgactctttagaatccctctgcatgcttctgtagttgctcttttacattgactttgaagatatttgtatcaccctaaaccctgcatac |
107 |
Q |
| |
|
||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
40021522 |
ataatttggtttcgactatttggaatccctctccatgcttctgtagttgctcttttacattggttttgaagatatatgtaacaccctaaaccctgcatac |
40021423 |
T |
|
| Q |
108 |
tatttgtagatagtaattcaacaattaataagaaatttca |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40021422 |
tatttgtagatagtaattcaacaattaataagaaatttca |
40021383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 195 - 293
Target Start/End: Complemental strand, 40021367 - 40021268
Alignment:
| Q |
195 |
tcatcatataatatcaaattgcagtgaaaataagtctcagcaacataaa-tcatttgtcatatcttaaaaattgaattaaatatgtcaaattaaaaatat |
293 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
40021367 |
tcatcatataatatcaaattgtagtgaaaataagtctgagcaacataaagtcatttgtcatatcttaaaaattgaactaaacatgtcaaattaaaaatat |
40021268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 164
Target Start/End: Original strand, 27505050 - 27505092
Alignment:
| Q |
121 |
taattcaacaattaataagaaatttcaagatgttactcttcaac |
164 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
27505050 |
taattcaacaattaa-aagaaatatcaagatgttactcttcaac |
27505092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 89 - 167
Target Start/End: Original strand, 11262009 - 11262088
Alignment:
| Q |
89 |
caccctaaaccctgcatactatttgtagatagtaattcaacaattaataagaa-atttcaagatgttactcttcaacatt |
167 |
Q |
| |
|
|||||||||||||||||||||||| || ||| ||||||||||||||||||||| |||||| | ||||||||||||||||| |
|
|
| T |
11262009 |
caccctaaaccctgcatactatttttaaataataattcaacaattaataagaacatttcaggttgttactcttcaacatt |
11262088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 293
Target Start/End: Complemental strand, 15002953 - 15002920
Alignment:
| Q |
260 |
aaaaattgaattaaatatgtcaaattaaaaatat |
293 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
|
|
| T |
15002953 |
aaaaattgaatcaaatatgtcaaattaaaaatat |
15002920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University