View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5769_high_4 (Length: 314)
Name: NF5769_high_4
Description: NF5769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5769_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 11 - 301
Target Start/End: Complemental strand, 39271607 - 39271317
Alignment:
| Q |
11 |
catcatcatctaagtaaatttcatttatgcagattcaagttcaaatgtatgcatagaggactcatacatatccactggagacgatcttgtcgcagtgaag |
110 |
Q |
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| T |
39271607 |
catcatcatctaagtaaatttcatttatgcagattcaagttcaaatgtatgcatagaggactcatacatatccacgggagacgatcttgtcgcagtgaag |
39271508 |
T |
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| Q |
111 |
agtggttgggacgaatacggaattgcctacggtcgtccgagctctaacatcaccatccggcgtgtgagtggatcatctccattcgccgggatcgccgttg |
210 |
Q |
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| T |
39271507 |
agtggttgggacgaatacggaattgcctacggtcgttcgagctctaacatcaccatccggcgtgtgagtggatcatctccattcgccgggatcgccgttg |
39271408 |
T |
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| Q |
211 |
gcagtgaaacatcaggtggagtgcagaacatacttgctgaacacatcaacctttacaacatgggaatcggtatacacattaagacaaatat |
301 |
Q |
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| T |
39271407 |
gcagtgaaacatcaggtggagtggaaaacatacttgctgaacacatcaacctttacaacatgggaatcggtatacacattaagacaaatat |
39271317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 74 - 233
Target Start/End: Complemental strand, 39262321 - 39262162
Alignment:
| Q |
74 |
atacatatccactggagacgatcttgtcgcagtgaagagtggttgggacgaatacggaattgcctacggtcgtccgagctctaacatcaccatccggcgt |
173 |
Q |
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| T |
39262321 |
atacatatccaccggagatgatcttgtctcaatgaagagtggatgggacaaatacggaatttcatacggccgtcttagctctagcattactatccggcat |
39262222 |
T |
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| Q |
174 |
gtgagtggatcatctccattcgccgggatcgccgttggcagtgaaacatcaggtggagtg |
233 |
Q |
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| T |
39262221 |
gtgagtggatcgtctccgttcatagggattgccggtgtcagtgaaacatctggtcgagtg |
39262162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 30 - 298
Target Start/End: Complemental strand, 16889822 - 16889554
Alignment:
| Q |
30 |
ttcatttatgcagattcaagttcaaatgtatgcatagaggactcatacatatccactggagacgatcttgtcgcagtgaagagtggttgggacgaatacg |
129 |
Q |
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| T |
16889822 |
ttcatttatgcagattcaagttcaaatgtctgcatagaggactcatacatatcaacaggagatgatcttgtggctgtgaagagtggatgggatgcatacg |
16889723 |
T |
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| Q |
130 |
gaattgcctacggtcgtccgagctctaacatcaccatccggcgtgtgagtggatcatctccattcgccgggatcgccgttggcagtgaaacatcaggtgg |
229 |
Q |
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| T |
16889722 |
gtatttcatacggccgtcctagcaatgacatcactatcagacgtataaccggatcgtctccatttgccggcattgccgtaggcagtgaaacatcaggcgg |
16889623 |
T |
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| Q |
230 |
agtgcagaacatacttgctgaacacatcaacctttacaacatgggaatcggtatacacattaagacaaa |
298 |
Q |
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| T |
16889622 |
agtacagaatgtactcgccgagcacatcaacctcttcaacatgggagttggtatccacattaagacaaa |
16889554 |
T |
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