View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5769_high_6 (Length: 279)
Name: NF5769_high_6
Description: NF5769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5769_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 270
Target Start/End: Complemental strand, 38448361 - 38448109
Alignment:
| Q |
17 |
acaaaagatctggatctatgccttctccatatatagttgtggaagcttgtcatgatcaaagttattgtcatcgtcatttgagtaattcgttgatgtcaaa |
116 |
Q |
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| T |
38448361 |
acaaaagatctggatctatgccttctccatatatagttgtggaagcttgtcatgatcaaagttattgtcatcgtcatt-gagtaattcgttgatgtcaaa |
38448263 |
T |
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| Q |
117 |
ccaaagtttcggattcattaagtcatcatggtttacttcaaaatcatgctccgaagaaactggctcctccccttttccatacatagttgtgtccaaggaa |
216 |
Q |
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| T |
38448262 |
ccaaagtttcggattcattaagtcatcatggtttacttcaaaatcatgctccgaagaaactggctcctccccttttccatacatagttgtgtccaaggaa |
38448163 |
T |
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| Q |
217 |
tcatttacatcatgctgaagcttgtcatgtaagttgttaatgtctttttcatat |
270 |
Q |
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| T |
38448162 |
tcatttacatcatgctgaagcttgtcatgtaagttgttaatgtctttttcatat |
38448109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 38448078 - 38448021
Alignment:
| Q |
133 |
attaagtcatcatggtttacttcaaaatcatgctccgaagaaactggctcctcccctt |
190 |
Q |
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| T |
38448078 |
attaagtcgttatggtttccttcaaaatcgttctccgaagaaactggcttcttccctt |
38448021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 38343420 - 38343362
Alignment:
| Q |
117 |
ccaaagtttcggattcattaagtcatcatggtttacttcaaaatcatgctccgaagaaa |
175 |
Q |
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| T |
38343420 |
ccaaagttccggattcattatgtcgtcatggtttacttcaacatcgctctccgaagaaa |
38343362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 38447613 - 38447555
Alignment:
| Q |
117 |
ccaaagtttcggattcattaagtcatcatggtttacttcaaaatcatgctccgaagaaa |
175 |
Q |
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|||||||| ||||||||||| ||| |||||||||||||||| ||| ||||||||||| |
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| T |
38447613 |
ccaaagttccggattcattatgtcgtcatggtttacttcaacatcgctctccgaagaaa |
38447555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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