View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5769_high_9 (Length: 238)
Name: NF5769_high_9
Description: NF5769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5769_high_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 63 - 221
Target Start/End: Complemental strand, 27832197 - 27832039
Alignment:
| Q |
63 |
gatgtcaaacattggagagtattaagccaccaataatgatagtcgaaaacgaaggtgctcgtgcgtcatagattatctcacaaagaaatgattcatgtga |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27832197 |
gatgtcaaacattggagagtattaagccaccaataatgatagtcgaaaacgaaggtgctcgtgcgtcatagattatctcaccaagaaatgattcatgtga |
27832098 |
T |
|
| Q |
163 |
aaaatatgagtcacgagtaaatagtcattttagtctctgaatgtgtaggcggttatcat |
221 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27832097 |
aaaatatgagtaacgagtaaatagtcattttagtctctgaatgtgtaggcagttatcat |
27832039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 63 - 222
Target Start/End: Complemental strand, 27827605 - 27827446
Alignment:
| Q |
63 |
gatgtcaaacattggagagtattaagccaccaataatgatagtcgaaaacgaaggtgctcgtgcgtcatagattatctcacaaagaaatgattcatgtga |
162 |
Q |
| |
|
||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27827605 |
gatgtcaaataatgaagagtattaagccaccaataatgatagtcgaaaacgaaggtgctcgtgcgtcatagattatctcaccaagaaatgattcatgtga |
27827506 |
T |
|
| Q |
163 |
aaaatatgagtcacgagtaaatagtcattttagtctctgaatgtgtaggcggttatcatt |
222 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27827505 |
aaaatacgagtcacaagtaaatagtcattttagtctctgaatgtgtaggcagttatcatt |
27827446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 27832282 - 27832219
Alignment:
| Q |
1 |
aaaaagacttaaaatttattacaaagttacaataccaaaacgataaacaacaatgagaacaaga |
64 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27832282 |
aaaaagacttaaaatttattacaaagttacaataccaaaacgataaacaacaatgagaacaaga |
27832219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 27827690 - 27827627
Alignment:
| Q |
1 |
aaaaagacttaaaatttattacaaagttacaataccaaaacgataaacaacaatgagaacaaga |
64 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27827690 |
aaaaagacttaaaagttattactaagttacaataccaaaacgataaacaacaatgagaacaaga |
27827627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University