View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5769_low_1 (Length: 537)
Name: NF5769_low_1
Description: NF5769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5769_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 23 - 522
Target Start/End: Complemental strand, 42646483 - 42645985
Alignment:
| Q |
23 |
ttgccattcacctctccccgcatccgcacccgtctccgatactcaaaacaaacacacacaacatgaagaacacactgcaacgcataacctaaaatccaca |
122 |
Q |
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| T |
42646483 |
ttgccattcacctctccccgcatccgcacccgtctccgatactcaaaacaaacacacacaacatgaagaacacactgcaacgcataacctaaaatccaca |
42646384 |
T |
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| Q |
123 |
acctaagcggtgaactcggcgattcattccgactcaaaatcaacacagtacccgccgcaataataaacacgaaattccacagaatatcaagaatcaccac |
222 |
Q |
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| T |
42646383 |
acctaagcggtgaactcggcgattcattccgactcaaaatcaacacagtaaccgccgcaataataaacacgaaattccacagaatatcaagaatcaccac |
42646284 |
T |
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| Q |
223 |
cggcttcgaataagcccaatcactttgccgttcttccaattgctcagccgcggtttctctcaccatcatcgacggctcgcgcatcaacctccgtccactc |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42646283 |
cggcttcgaataagcccaatcactttgccgttcttccaattgctcagccgcggtttctctcaccatcatcgacggctcacgcatcaacctccgtccactc |
42646184 |
T |
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| Q |
323 |
gcttgccgtagaaaccgcgccgcttgccggagactcggcgcacggagaactctccgtccagagtttgattcgtccgatgaatttccaattaacggcgttg |
422 |
Q |
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| T |
42646183 |
gcttgccgtagaaaccgcgccgcttgccggagactcggcgcacggagaactctccgtccagagtttgattcgtccgatgaatttccaattaacggcgttg |
42646084 |
T |
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| Q |
423 |
gatccgtcgttgccatgtttgaattcttctcactgtttagagagaaaaaattaggttaaattctgataatttatttttgctgcggatttggtcttgtttt |
522 |
Q |
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| T |
42646083 |
gatccgtcgtcgccatgtttgaattcttctcactgtttagagagaaaaaattaggttaaattctgataatttatttttg-tgcggatttggtcttgtttt |
42645985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 2925458 - 2925527
Alignment:
| Q |
206 |
atatcaagaatcaccaccggcttcgaataagcccaatcactttgccgttcttccaattgctcagccgcgg |
275 |
Q |
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| T |
2925458 |
atatcgagaatcacaaccggcttcgaatacgcccaatcgctttgtcgttcttctaattgctcagccgcgg |
2925527 |
T |
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