View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5769_low_2 (Length: 448)
Name: NF5769_low_2
Description: NF5769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5769_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 208 - 431
Target Start/End: Original strand, 48347538 - 48347763
Alignment:
| Q |
208 |
gaaaatatttatataagaaaataataag--ggtatatttaaaatttgtttatgaattaaagttatttcttaactttatagtagtaaaaacaaagttaaac |
305 |
Q |
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| T |
48347538 |
gaaaacatttgtataagaaaataataagagggtatatttaaaatttgtttatgaattaaagttatttcttaactttatagtagtaaatacaaagttaaac |
48347637 |
T |
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| Q |
306 |
tacatgtagtacatgttacttactgacacatagaatgtttggagagagcaaacaagaatacgttacgatgaaaagcacagtagctaggtgatttatttat |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48347638 |
tacatgtagtacatgttacttactgacacatagaatgtttggagagagcaaacaagaatacgttacgatgaaaagcacagtagctaggtgatttatttat |
48347737 |
T |
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| Q |
406 |
aaaagcaatcaagtagggtacgtact |
431 |
Q |
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|||||||||||||||||||||||||| |
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| T |
48347738 |
aaaagcaatcaagtagggtacgtact |
48347763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 70 - 207
Target Start/End: Original strand, 48345923 - 48346059
Alignment:
| Q |
70 |
tttctgtacaaaattagtcgctatctaactagttttgccacaaccaagcgtgtatgatcgtacgcatgagagagtatcactctttggagttcggatatgc |
169 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||| |||||| | ||||| |
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| T |
48345923 |
tttctgtacaaaattagtcgctatctaactagttttgccacaaccaagcgtgtatgatcgtacgcctgagagaggatcactttttcgagttcag-tatgc |
48346021 |
T |
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| Q |
170 |
tctatttactccatttaagaggtttagatgcaagacat |
207 |
Q |
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| T |
48346022 |
tcaatttactccatttaaggggtttagatgcgagacat |
48346059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 48345801 - 48345854
Alignment:
| Q |
20 |
cattatgaaacggttaaatttttcataacttannnnnnngataaataaattttc |
73 |
Q |
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| T |
48345801 |
cattatgaaacggttaaatttttcataacttatttttttgataaataaattttc |
48345854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 8799601 - 8799551
Alignment:
| Q |
156 |
gagttcggatatgctctatttactccatttaagaggtttagatgcaagacatg |
208 |
Q |
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| T |
8799601 |
gagttcgggtatgctccatttactccattta--gggtttagatgcaagacatg |
8799551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 19037737 - 19037788
Alignment:
| Q |
155 |
ggagttcggatatgctctatttactccatttaagaggtttagatgcaagacatg |
208 |
Q |
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| T |
19037737 |
ggagttcgggtatgctccatttactccatttaaga--tttggatgcaagacatg |
19037788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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