View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5769_low_7 (Length: 245)
Name: NF5769_low_7
Description: NF5769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5769_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 109 - 228
Target Start/End: Original strand, 10010293 - 10010412
Alignment:
| Q |
109 |
ggacataaactataccaatttaagctcaaatcaattcgatagcaatatattttaccggattctattcaacctatataaggacaaaaataaaagcaataac |
208 |
Q |
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| T |
10010293 |
ggacataaactatactaatttaagctcaaatcaatttgacagcaatatattttaccggattctattcaacctatataaggataaaaataaaagcaattac |
10010392 |
T |
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| Q |
209 |
cgtgcatcctatgtaactaa |
228 |
Q |
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| T |
10010393 |
cgtgcatcctatgtaactaa |
10010412 |
T |
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Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 10010182 - 10010269
Alignment:
| Q |
2 |
tacagatatgagatgtgatattttgtcttcattccaaaattactccaagaacaccaagctacctgtagcagagcgagaagacaatttc |
89 |
Q |
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| T |
10010182 |
tacagatatgagatgtgatattttgtcttcattccaaaattactccaagaacaccaagctacctgtagcagagcgagaagacaatttc |
10010269 |
T |
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