View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5769_low_8 (Length: 239)
Name: NF5769_low_8
Description: NF5769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5769_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 36557060 - 36556844
Alignment:
| Q |
18 |
tttcacatctcagtccataaccaaattcctacattatagtcaaaatcttataatacacataattttttattatt-attgcaaatgatattaccttaagac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
36557060 |
tttcacatctcagtccataaccaaattcctacattatagtcaaaatcttataatacacataattttttattatttattaaaaatgatattaccttaagac |
36556961 |
T |
|
| Q |
117 |
tagttctaattagtctaacaagcaaacacgttcctaaccataactttaatttctctaaaaatagtaaacaaaacactctttaaattctcaacattcactc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
36556960 |
tagttctaattagtctaacaagcaaacacgttcctaaccataactttaatttctccaaaaatagtaaac-aaactctctttaaattctcaacattcactc |
36556862 |
T |
|
| Q |
217 |
atctaacaagctagcata |
234 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
36556861 |
atctaacaagctagcata |
36556844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 36561409 - 36561460
Alignment:
| Q |
18 |
tttcacatctcagtccataaccaaattcctacattatagtcaaaatcttata |
69 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36561409 |
tttcacatctcggtccttaaccaaattcctacattatagtcaaaatattata |
36561460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University