View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5770-Insertion-1 (Length: 1070)
Name: NF5770-Insertion-1
Description: NF5770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5770-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 555; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 8 - 692
Target Start/End: Original strand, 17340523 - 17341218
Alignment:
| Q |
8 |
tcatgatcctcaagctttgccttaacaagtcaaattccctttcttgtttgtacctttctttctccactgaacctaattgagcttttaaagcttttatgct |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17340523 |
tcatgatcctcaagctttgccttaacaagtcaaattccctttcttgtttgtacctttctttctccactgaacctaattgagcttttaaagcttttatgct |
17340622 |
T |
|
| Q |
108 |
ttcttctttctcttgcaattccctcttcacattttcaatttggatgtcattttcctcagctttccaatacaaaccatctcctatgagtatatttccaaaa |
207 |
Q |
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| T |
17340623 |
ttcttctttctcttgcaattccctcttcagattttcaatttggatgtcattttcctcagctttccaatacaaaccatctcctatgagtatatttccaaaa |
17340722 |
T |
|
| Q |
208 |
gcaaataagctcaaatagttcaaacataacattcatgcatttgtttctaacaacctcacctaattatatatcttagtagtatgaatatttctgaagaaga |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
17340723 |
gcaaataagctcaaatagttcaaacataacattcatgcatttgtttctaacaacctcacctaattatatatcttagtagtatgaatatttctcaagaaga |
17340822 |
T |
|
| Q |
308 |
cattttcctcaaaataattcaccaaattattgtcacatatgagtgtctgtttggagtggcgtttgatgaaagcaaaaacatatctacaca---------t |
398 |
Q |
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| T |
17340823 |
cattttcctaaaaataattcaccaaattattgttacatatgagtgtctgttcggagtggcgtttgatg-aagcaaaaacacatctacacactttacgatg |
17340921 |
T |
|
| Q |
399 |
taaatctgccgtagttttaagaagctgaaaattaaaactttcgcgttaaaaatggattttaccgtgattttaaacaaaatgtgatttggacaagttcatc |
498 |
Q |
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||||||||||||| |||||| ||||||||||||| ||||| | |||||||| | ||||||||||||||||||||||||| |||||||| | | ||||||| |
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| T |
17340922 |
taaatctgccgtaattttaaaaagctgaaaattataacttccacgttaaaagtagattttaccgtgattttaaacaaaacgtgatttgaagacgttcatc |
17341021 |
T |
|
| Q |
499 |
caaacat---ctgaattgactagttttgaaatgtaatatgatgggattgaaccccatctgcctcacactacttttcaaagggcattaatagcatacaaag |
595 |
Q |
| |
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||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
17341022 |
caaacatgcactgaattgactagttttgaaatgtactatgatgggattgaaccccatctgccacacactacttttcaaaggacattaatagcatacaaag |
17341121 |
T |
|
| Q |
596 |
actaatgcaaatcacacaaaaatacaaacactaattgtttggataaaaatcttaattaaacaattattatataatcattattttataagctatttct |
692 |
Q |
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| T |
17341122 |
actaatgcaaatcacaaaaaaatacaaacactaattgtttggataaaaatcttaattaaacaattattatataatcattattttataagctatttct |
17341218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 752 - 1023
Target Start/End: Original strand, 17341287 - 17341558
Alignment:
| Q |
752 |
cttacaagattaaaatagattatacacattatagtttgttttttataaactctctcaaacatgctcataaataagctaaaatagcttaatacaacttata |
851 |
Q |
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| T |
17341287 |
cttacaagataaaaatagattatacacattatagtttgttttttataaactctctcaatcatgctcataaataagctaaaatagcttaattcaacttata |
17341386 |
T |
|
| Q |
852 |
agataaaaatagatagattatacacattataatttgtttttataaactttctcaaacatgctcataaataagctaaaataactcaattcaaaccatgtct |
951 |
Q |
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| T |
17341387 |
agataaaaatagatagattatacacattataatttgtttttataaactctctcaaacatgctcataaataagctaaaataactcaattcaaactatgtct |
17341486 |
T |
|
| Q |
952 |
taagacattaattacaaattatgattaacttaccatcatatgttctttggatgagatcatccaactcattct |
1023 |
Q |
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| T |
17341487 |
taagacattaataacaaattatgattaacttaccatcatatgttctttggatgagatcatccaactcattct |
17341558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 844 - 942
Target Start/End: Original strand, 17341285 - 17341380
Alignment:
| Q |
844 |
aacttataagataaaaatagatagattatacacattataatttg-tttttataaactttctcaaacatgctcataaataagctaaaataactcaattcaa |
942 |
Q |
| |
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|||||| ||||||||| ||||||||||||||||||| |||| |||||||||||| |||||| |||||||||||||||||||||||| || ||||||| |
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| T |
17341285 |
aacttacaagataaaa----atagattatacacattatagtttgttttttataaactctctcaatcatgctcataaataagctaaaatagcttaattcaa |
17341380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 349 - 393
Target Start/End: Original strand, 3075809 - 3075851
Alignment:
| Q |
349 |
agtgtctgtttggagtggcgtttgatgaaagcaaaaacatatcta |
393 |
Q |
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| T |
3075809 |
agtgtatgtttggagtggcgtttgatgaa--caaaaacatatcta |
3075851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 395
Target Start/End: Complemental strand, 34250980 - 34250935
Alignment:
| Q |
349 |
agtgtctgtttggagtggcgtttgatgaaagcaaaaacatatctaca |
395 |
Q |
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| T |
34250980 |
agtgtctgtttggagtggcgtttgatgaaa-caaaatcacatctaca |
34250935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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