View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5770_high_3 (Length: 447)
Name: NF5770_high_3
Description: NF5770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5770_high_3 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 13 - 447
Target Start/End: Original strand, 2425002 - 2425434
Alignment:
| Q |
13 |
aaaatgtggtgcagctttacgaacaaaatgaaattaagaatactataaaataatgatgttttcgtctaaagcaaagttgcatgttgccaatgtacacctt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
2425002 |
aaaatgtggtgcagctttacgaacaaaatgaaattaagaatactataaaataatgatgttttcgtctaaagcaaaggtgcatgttgttaatgtacacctt |
2425101 |
T |
|
| Q |
113 |
cataaaatagggtggatgggtgtgttatagcattactctcccttcatatatacatacacacgcatatacatgcaacacttcttttaaagannnnnnnnnn |
212 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| ||| ||||||| |
|
|
| T |
2425102 |
cataaaatagggtgggtgggtgtgttatagcattactctcccttcatatatatacacatacgcatatacatgcaaccctt---ttaaagattttttcttt |
2425198 |
T |
|
| Q |
213 |
nnnnnnnncgagaggttctttagagagatgttgaattatatatttaatttgatccgaacttatatatcaaaatgacccttttatccaattcttctatcgg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2425199 |
tcttttttcgagaggttctttagagagatgttgaattatatatttaatttgatccgaacttatatatcaaaatgacccttttatccaattcttctatcgg |
2425298 |
T |
|
| Q |
313 |
ttttcttggcaatcaaagaagtagtaatctcttgctcatgtctccccagcttcaaa-taggtctctgtataatctacccaacatttcaaagctccaacac |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2425299 |
ttttcttggcaatcaaagaagtagtaatctcttgctcctgtctccccagcttcaaagtaggtctctgtataatctacccaacatttcaaagctccaacac |
2425398 |
T |
|
| Q |
412 |
aagcacaacaacaatatcaaagtgtgctatcttttc |
447 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2425399 |
aagcacaacaacaacatcaaagtgtgctatcttttc |
2425434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 277 - 447
Target Start/End: Original strand, 2428577 - 2428749
Alignment:
| Q |
277 |
tatcaaaatgaccct-tttatccaattcttctatcggttttcttggcaatcaaagaagtagtaatctcttgctcatgtctccccagcttcaaa-taggtc |
374 |
Q |
| |
|
|||||||||||| || |||||||||||||| |||||||||| ||||| ||||||||||| |||||| |||||| |||||||| |||||| || |||||| |
|
|
| T |
2428577 |
tatcaaaatgactctctttatccaattcttttatcggttttattggccatcaaagaagttgtaatcctttgctcttgtctccctagcttcgaagtaggtc |
2428676 |
T |
|
| Q |
375 |
tctgtataatctacccaacatttcaaagctccaacacaagcacaacaacaatatcaaagtgtgctatcttttc |
447 |
Q |
| |
|
| ||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2428677 |
tttgtataatccacccagcatttcaacactccaacacaagcacaacaacaatatcaaagtgtgctatcttttc |
2428749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 413
Target Start/End: Original strand, 8803296 - 8803404
Alignment:
| Q |
307 |
tatcggttttcttggcaatcaaagaagtagtaat---ctcttgctcatgtctccccagcttcaaa-taggtctctgtataatctacccaacatttcaaag |
402 |
Q |
| |
|
||||| |||||||||| ||||||| |||||| || |||||||| |||||||| ||||||||| |||||||| | |||||| |||| |||||| || |
|
|
| T |
8803296 |
tatcgattttcttggccatcaaaggagtagttatattctcttgct--tgtctcccaagcttcaaagtaggtctccgaataatccacccgtcatttcgaaa |
8803393 |
T |
|
| Q |
403 |
ctccaacacaa |
413 |
Q |
| |
|
||||||||||| |
|
|
| T |
8803394 |
ctccaacacaa |
8803404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 296 - 422
Target Start/End: Original strand, 51358155 - 51358282
Alignment:
| Q |
296 |
tccaattcttctatcggttttcttggcaatcaaagaagtagtaatctcttgctcatgtctccccagcttcaaa-taggtctctgtataatctacccaaca |
394 |
Q |
| |
|
|||||||| |||||||||||| ||||| ||||||| |||||||||| ||||||| ||| |||| ||||| ||| ||||||||||||||||| | ||| | |
|
|
| T |
51358155 |
tccaattcatctatcggtttttttggccatcaaaggagtagtaatcccttgctcttgtttcccaagctttaaagtaggtctctgtataatccatccatct |
51358254 |
T |
|
| Q |
395 |
tttcaaagctccaacacaagcacaacaa |
422 |
Q |
| |
|
|||| ||| | |||||||| || ||||| |
|
|
| T |
51358255 |
tttcgaagtttcaacacaaacaaaacaa |
51358282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 427
Target Start/End: Complemental strand, 14537358 - 14537221
Alignment:
| Q |
291 |
ttttatccaattcttctatcggttttcttggcaatcaaagaagtagtaatctcttgctcatgtctccccagcttcaaa-taggtctctgtataatctacc |
389 |
Q |
| |
|
||||||| ||||| ||||||| |||||||||| ||||||| || | ||||| |||||| ||| | || || |||||| ||| |||| ||| |||| || |
|
|
| T |
14537358 |
ttttatcgaattcatctatcgattttcttggccatcaaaggagcaataatccattgctcttgttttccaagtttcaaagtagatctccgtaaaatccact |
14537259 |
T |
|
| Q |
390 |
caacatttcaaagctccaacacaagcacaacaacaata |
427 |
Q |
| |
|
|| |||||| |||||||||||||| ||||||||||||| |
|
|
| T |
14537258 |
catcatttcgaagctccaacacaaacacaacaacaata |
14537221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 369 - 447
Target Start/End: Original strand, 39664162 - 39664240
Alignment:
| Q |
369 |
taggtctctgtataatctacccaacatttcaaagctccaacacaagcacaacaacaatatcaaagtgtgctatcttttc |
447 |
Q |
| |
|
|||||||| |||||||| ||||| |||||| |||||||||||||| |||||||| | || ||||||| |||||||||| |
|
|
| T |
39664162 |
taggtctccgtataatccacccatcatttcgaagctccaacacaaacacaacaatagtagcaaagtgcactatcttttc |
39664240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 435
Target Start/End: Complemental strand, 12167352 - 12167212
Alignment:
| Q |
296 |
tccaattcttctatcggttttcttggcaatcaaagaagtagtaatctcttgctcatgtctccccagcttcaaa-taggtctctgtataatctacccaaca |
394 |
Q |
| |
|
|||||||| ||||| | ||||||| || ||||||| |||||||||||| ||||| || | || ||||||||| ||||||| ||||||||| ||| | || |
|
|
| T |
12167352 |
tccaattcatctattgattttcttagccatcaaaggagtagtaatctcatgctcttgctttccaagcttcaaagtaggtctttgtataatccacctagca |
12167253 |
T |
|
| Q |
395 |
tttcaaagctccaacacaagcacaacaacaatatcaaagtg |
435 |
Q |
| |
|
|||| || || |||||||| || |||| ||| | ||||||| |
|
|
| T |
12167252 |
tttcgaatcttcaacacaaacataacatcaaaagcaaagtg |
12167212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 390 - 447
Target Start/End: Complemental strand, 34312471 - 34312414
Alignment:
| Q |
390 |
caacatttcaaagctccaacacaagcacaacaacaatatcaaagtgtgctatcttttc |
447 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| || |||| |||||||||| |
|
|
| T |
34312471 |
caacatttcgaagctccaacacaagcacaacaacaatagcatagtgcactatcttttc |
34312414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University