View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5770_high_9 (Length: 250)
Name: NF5770_high_9
Description: NF5770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5770_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 6e-92; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 38300691 - 38300869
Alignment:
| Q |
1 |
gatgcatcaacacgtgaaaggaagttgcaacaagtaaagagcaagttgtacatgctatttgacaagtattctagcaaaagtactccttcttgcgtgcaaa |
100 |
Q |
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| T |
38300691 |
gatgcatcaacacgtgaaaggaagttgcaacaagtaaagagcaagttgtacatgctatttgacaagtattctagcaaaagtactccttcttgcgtgcaaa |
38300790 |
T |
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| Q |
101 |
gaattaaccaggaccaatcttctagcgtgccatttcaagagaagttaaactctttatctgacggcctatttgatgtaag |
179 |
Q |
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| T |
38300791 |
gaattatccaggaccaatcttctagcatgccatttcaagagaagttaaactctttatctgacggcctatttgatgtaag |
38300869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 2 - 179
Target Start/End: Original strand, 38309339 - 38309516
Alignment:
| Q |
2 |
atgcatcaacacgtgaaaggaagttgcaacaagtaaagagcaagttgtacatgctatttgacaagtattctagcaaaagtactccttcttgcgtgcaaag |
101 |
Q |
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|||||||||| | |||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||| |||||||||| |
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| T |
38309339 |
atgcatcaacctgcgaaaggaagttgcagcaagtaaagagcaagttgtacatgctatttcacaagaattcttgcaaaagtacttcttctggcgtgcaaag |
38309438 |
T |
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| Q |
102 |
aattaaccaggaccaatcttctagcgtgccatttcaagagaagttaaactctttatctgacggcctatttgatgtaag |
179 |
Q |
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| T |
38309439 |
aacaattcaggaccaatcttctagtgtgccattgcaaaagaagttaaagtctttatctcagggcctatttgatgtaag |
38309516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 14 - 179
Target Start/End: Original strand, 38321449 - 38321614
Alignment:
| Q |
14 |
gtgaaaggaagttgcaacaagtaaagagcaagttgtacatgctatttgacaagtattctagcaaaagtactccttcttgcgtgcaaagaattaaccagga |
113 |
Q |
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| T |
38321449 |
gtgaaaggaagttgcaagaagtaaagagtaagttgtacatgctatttgacaagtattctagcaaaagtatttcttctggggtgcaaagaactattcagga |
38321548 |
T |
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| Q |
114 |
ccaatcttctagcgtgccatttcaagagaagttaaactctttatctgacggcctatttgatgtaag |
179 |
Q |
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| T |
38321549 |
cgaatcttctagcatgccattgcaaaagaaattgaagtcttcatctcacggcctatttgatgtaag |
38321614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 179
Target Start/End: Original strand, 38317361 - 38317519
Alignment:
| Q |
21 |
gaagttgcaacaagtaaagagcaagttgtacatgctatttgacaagtattctagcaaaagtactccttcttgcgtgcaaagaattaaccaggaccaatct |
120 |
Q |
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| T |
38317361 |
gaagttgcaactagtaaagagaaagttgtacatgctatttgacaagtattctagcaaaagcacttcttctggcctaaaaagaactactcaggaccaatct |
38317460 |
T |
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| Q |
121 |
tctagcgtgccatttcaagagaagttaaactctttatctgacggcctatttgatgtaag |
179 |
Q |
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|||| | ||||||| ||| |||| ||||| ||||||||| |||||||||| ||||||| |
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| T |
38317461 |
tctaccatgccattgcaaaagaaattaaagtctttatctcacggcctattcaatgtaag |
38317519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 38306592 - 38306766
Alignment:
| Q |
5 |
catcaacacgtgaaaggaagttgcaacaagtaaagagcaagttgtacatgctatttgacaagtattctagcaaaagtactccttcttgcgtgcaaagaat |
104 |
Q |
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||||||| ||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| | |||||| || |
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| T |
38306592 |
catcaacttgtgaacggaagttgcaaaaagtaaagacaaagttgtacatgctatttgacaagtattctagcaaaagtacttcttctggtatgcaaacaac |
38306691 |
T |
|
| Q |
105 |
taaccaggaccaatcttctagcgtgccatttcaagagaagttaaactctttatctgacggcctatttgatgtaag |
179 |
Q |
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| |||| ||||||||||| | ||||||| ||| |||| | | ||||||||| | ||||||||||||||||| |
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| T |
38306692 |
tgttcagggccaatcttctaccatgccattgcaaaagaactctgagtctttatctcatggcctatttgatgtaag |
38306766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 38326186 - 38326288
Alignment:
| Q |
1 |
gatgcatcaacacgtgaaaggaagttgcaacaagtaaagagcaagttgtacatgctatttgacaagtattctagcaaaagtactccttcttgcgtgcaaa |
100 |
Q |
| |
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||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||| || ||||| ||||| || |||||| |
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| T |
38326186 |
gatgcatcaacctgtgaaaggaagttgcaacaagtaaggacgaagttgtacatgctatttggcaagtattctagccaacgtacttcttctggcatgcaaa |
38326285 |
T |
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| Q |
101 |
gaa |
103 |
Q |
| |
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||| |
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| T |
38326286 |
gaa |
38326288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 143
Target Start/End: Original strand, 38313934 - 38314072
Alignment:
| Q |
5 |
catcaacacgtgaaaggaagttgcaacaagtaaagagcaagttgtacatgctatttgacaagtattctagcaaaagtactccttcttgcgtgcaaagaat |
104 |
Q |
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||||||| ||||| ||||||||||| ||||||||| ||||||||||||||||||| |||||| ||||||||||||||| ||||| | ||||||| || |
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| T |
38313934 |
catcaacttgtgaacggaagttgcaaaaagtaaagacaaagttgtacatgctatttgccaagtactctagcaaaagtacttcttctagggtgcaaacaac |
38314033 |
T |
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| Q |
105 |
taaccaggaccaatcttctagcgtgccatttcaagagaa |
143 |
Q |
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|| ||| ||||||||||| | ||||||| ||| |||| |
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| T |
38314034 |
tatttagggccaatcttctaccatgccattgcaaaagaa |
38314072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 38850004 - 38849817
Alignment:
| Q |
1 |
gatgcatcaacacgtgaaaggaagttgcaacaagtaaagagcaagttgtacatgctatttgacaagtattctagcaaaagtactccttcttgcgtgcaaa |
100 |
Q |
| |
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||||||||||| ||||||||||| | || ||||||||||| ||||||| |||||||||||| ||| ||||| |||| || ||| || || | || |||| |
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| T |
38850004 |
gatgcatcaacctgtgaaaggaagctacagcaagtaaagagaaagttgtgcatgctatttgagaagcattctggcaacagcactactgctggggttcaaa |
38849905 |
T |
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| Q |
101 |
gaatta---------accaggaccaatcttctagcgtgccatttcaagagaagttaaactctttatctgacggcctatttgatgtaag |
179 |
Q |
| |
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||| || | |||||||||||||||||| ||||||| ||| |||| ||||| ||||||||| | ||||||||||||||||| |
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| T |
38849904 |
gaactattaaggagaatcaggaccaatcttctagcatgccattacaaaagaaattaaagtctttatctcatggcctatttgatgtaag |
38849817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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