View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5770_low_13 (Length: 237)
Name: NF5770_low_13
Description: NF5770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5770_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 124965 - 124747
Alignment:
| Q |
1 |
aaatggtgttatattatattatatagtaatggcaatattaannnnnnnncttaaattttgtaggttggagcgaataaatcccgaatgtccaattacgagt |
100 |
Q |
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| T |
124965 |
aaatggtgttatattatat---atagtaatggaaatattaattttttttcttaaattttgtaggttggagcgaataaatcctgaatgtccaattactagt |
124869 |
T |
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| Q |
101 |
ttcccatattctaagccaatagacaattgtcttgctaaggtcataaagatctctgattcttaatgtgttactatgcaatgaccagattttgagttatata |
200 |
Q |
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| T |
124868 |
ttcccatattctaagccaatagacaattgtcttgctaaggtcataaagatctctgattcttaatgtgttactatgcaatgaccagattttgagttatata |
124769 |
T |
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| Q |
201 |
cttgctcataaatcaacttaat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
124768 |
cttgctcataaatcaacttaat |
124747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 135449 - 135336
Alignment:
| Q |
50 |
cttaaattttgtaggttggagcgaataaatcccgaatgtccaattacgagtttcccatattctaagccaatagacaattgtcttgctaaggtcataaaga |
149 |
Q |
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| T |
135449 |
cttaaactttgtaggttggagcgaataaattcggaatgtccgcttactagtttcccacaacctaaaccaatagacaactgtttggctaggataataaagc |
135350 |
T |
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| Q |
150 |
tctctgattcttaa |
163 |
Q |
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| T |
135349 |
tctctaattcttaa |
135336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 51 - 164
Target Start/End: Complemental strand, 3957184 - 3957071
Alignment:
| Q |
51 |
ttaaattttgtaggttggagcgaataaatcccgaatgtccaattacgagtttcccatattctaagccaatagacaattgtcttgctaaggtcataaagat |
150 |
Q |
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| T |
3957184 |
ttaaattttgtaggttggagcgaataaacccagaatgtccacttactagtttgccatatattaagccaacagacaactgtcttgctaaggtcacaaagct |
3957085 |
T |
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| Q |
151 |
ctctgattcttaat |
164 |
Q |
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||||||| |||||| |
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| T |
3957084 |
ctctgatgcttaat |
3957071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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