View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5770_low_2 (Length: 1185)
Name: NF5770_low_2
Description: NF5770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5770_low_2 |
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| [»] scaffold0031 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 190 - 628
Target Start/End: Complemental strand, 2046399 - 2045977
Alignment:
| Q |
190 |
atcaaatattccacgtaaatatcaaatttgcaaatacaacaactaatatcaattgtatgttggattgaaaaattaaacattactttgtgagatgatgatt |
289 |
Q |
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| T |
2046399 |
atcaaatattccacggaaatatcaaatttggaaatacaaaaactaaaatcaattgtatgtt---------------acattactttgtgagatgatgatt |
2046315 |
T |
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| Q |
290 |
atagaagaagaatgagatataagaatgaataaaccggtgtggtatatatacaagtgtgtattctacaaatgcaataaccatgtatgtagagatggttatg |
389 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2046314 |
atagaagaagaatgagatataagaatgaataaacgggtgtggtatatatacaagtgtgtattctacaaatgcaataaccatgtatgtagagatggttatg |
2046215 |
T |
|
| Q |
390 |
ctactaactgtggtaactatatgatcagtctctaactaactcaatcttatccaattaatttctagttcaagtaattgtactctaacaaacttgtgtgtta |
489 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||| |
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| T |
2046214 |
ctactaactgtggtaactatgtgatcagtctctaactaactcaatcttatccaattaatttctagttcaagtaaatgtagtctaacaaactt--gtgtta |
2046117 |
T |
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| Q |
490 |
atatgaagtataacagcgaaaagacgcgtacgtatgagtgatcgtatttctgctcctttattgcgctagcgttttaaaattatgaacgatagagagaaga |
589 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2046116 |
atatgaagtataacagcgaaaagatgcgtacgtatgagtgatcgtatttctgctcctttattgcgctaacgttttaaaattatgaacgatagagagaaga |
2046017 |
T |
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| Q |
590 |
tcaacttgaagcttatttggggattgaat-atgtcccaac |
628 |
Q |
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| T |
2046016 |
tcaactcgaagcttatttgaggattgaatcatgtcccaac |
2045977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 869 - 1154
Target Start/End: Complemental strand, 2045835 - 2045541
Alignment:
| Q |
869 |
cttaaacaatatcctaaggatactctttaatatttttgatgaattatttcactaacaagatgtttaaaagttataaaggatatagtattaaacacggtt- |
967 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2045835 |
cttaaacaatatcctaaggatactctttaatatttttgatgagttatttcactaacaagatgtttaaaagttataaaggatatagtaaaaaacacggttc |
2045736 |
T |
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| Q |
968 |
-------agtaaa-gttgtttcataaaacatctctcttcaattagaactattttgtttatctccacaacgagagtacttgttagataccaaataaagagt |
1059 |
Q |
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| T |
2045735 |
tgttgaaagtaaaagttgcttcataaaacatctctcttcaattagaactattttgtttgtctccacaacgagagtacttgttagataccaaataaagagt |
2045636 |
T |
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| Q |
1060 |
aagaccctctcatcatggatgatccaacatatagaaaaatcttttgtgacataacatggaaaaaagtgtcaaacacttattgactaatattaatt |
1154 |
Q |
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| T |
2045635 |
aagaccctctcatcatggatgatccaacatatagaaaaatcgtttgtgacataacatggacaaaagtgtcaaacacttattgactaatattaatt |
2045541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 132; E-Value: 6e-68
Query Start/End: Original strand, 7 - 175
Target Start/End: Complemental strand, 2047677 - 2047499
Alignment:
| Q |
7 |
tggacatcatcattccagctgtttagctgctccaccttggtatgtagctatcctcccata----------caaagtggagtgtacacttcaaaaggaatt |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2047677 |
tggacatcatcattccagctgtttagctgctccaccttggtatgtagctatcctcccatatcctcccatacaaagtggagtgtacacttcaaaaggaatt |
2047578 |
T |
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| Q |
97 |
ttgaaaatataattattagtttgatggacaaagagatatgttaaattgttttaggtcgcgtcacctttttatacatttc |
175 |
Q |
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|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2047577 |
ttaaagttataattattagtttgatggacaaagagatatgttaaattgttttaggtcgcgtcacctttttatacatttc |
2047499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 76; E-Value: 2e-34
Query Start/End: Original strand, 723 - 806
Target Start/End: Complemental strand, 2045981 - 2045898
Alignment:
| Q |
723 |
ccaaccaagtgaatatctttgttattcagacatctccatatgaaattgcaaatagtttgatgaatattgttttaaagaacatag |
806 |
Q |
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| T |
2045981 |
ccaaccaagtgaatatctttgttattcagacctctccatatgaaattgcaaatagtttcatgaatattgttttaaagaacatag |
2045898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 1006 - 1108
Target Start/End: Complemental strand, 2052531 - 2052429
Alignment:
| Q |
1006 |
actattttgtttatctccacaacgagagtacttgttagataccaaataaagagtaagaccctctcatcatggatgatccaacatatagaaaaatcttttg |
1105 |
Q |
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| T |
2052531 |
actatttagtttacctccacaacgagagtatttgttagatatagaataaagaataagatcctctcatcatggaggatccaacataaagagaaattgtttg |
2052432 |
T |
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| Q |
1106 |
tga |
1108 |
Q |
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||| |
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| T |
2052431 |
tga |
2052429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 173 - 240
Target Start/End: Complemental strand, 2046466 - 2046399
Alignment:
| Q |
173 |
ttcatttggaccataaaatcaaatattccacgtaaatatcaaatttgcaaatacaacaactaatatca |
240 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| |||||| |||| |
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| T |
2046466 |
ttcatttgaaccataaaatcaaatattccacggaaatatcaaatttggaaatacaaaaactaaaatca |
2046399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 869 - 943
Target Start/End: Complemental strand, 2052631 - 2052558
Alignment:
| Q |
869 |
cttaaacaatatcctaaggatactctttaatatttttgatgaattatttcactaacaagatgtttaaaagttata |
943 |
Q |
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||||||| ||||| ||||| ||| |||||||||||| || |||||||| ||||||||||||||||||||||||| |
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| T |
2052631 |
cttaaacgatatcataaggc-actttttaatatttttcataaattatttaactaacaagatgtttaaaagttata |
2052558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 422 - 485
Target Start/End: Complemental strand, 23509286 - 23509223
Alignment:
| Q |
422 |
taactaactcaatcttatccaattaatttctagttcaagtaattgtactctaacaaacttgtgt |
485 |
Q |
| |
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|||||||||||||||||||||| ||| |||||||||| |||||| |||||| |||| |||||| |
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| T |
23509286 |
taactaactcaatcttatccaactaacttctagttcacgtaattaaactctagcaaatttgtgt |
23509223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 536 - 576
Target Start/End: Original strand, 46899 - 46939
Alignment:
| Q |
536 |
tttctgctcctttattgcgctagcgttttaaaattatgaac |
576 |
Q |
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| T |
46899 |
tttctgctcttttattgcgctaacgttttaaaattatgaac |
46939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 536 - 577
Target Start/End: Original strand, 15044116 - 15044157
Alignment:
| Q |
536 |
tttctgctcctttattgcgctagcgttttaaaattatgaacg |
577 |
Q |
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||||||||| |||||||||||| ||||| ||||||||||||| |
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| T |
15044116 |
tttctgctcttttattgcgctaacgtttgaaaattatgaacg |
15044157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 423 - 484
Target Start/End: Original strand, 35987789 - 35987850
Alignment:
| Q |
423 |
aactaactcaatcttatccaattaatttctagttcaagtaattgtactctaacaaacttgtg |
484 |
Q |
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||||||||||||||||| ||||||| |||||| |||| ||| | |||||||||||||||| |
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| T |
35987789 |
aactaactcaatcttattcaattaacttctagctcaaataactaacctctaacaaacttgtg |
35987850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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