View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5770_low_3 (Length: 540)

Name: NF5770_low_3
Description: NF5770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5770_low_3
NF5770_low_3
[»] chr5 (4 HSPs)
chr5 (75-522)||(1754572-1755019)
chr5 (175-376)||(1756712-1756913)
chr5 (40-80)||(1754500-1754540)
chr5 (274-338)||(1759335-1759399)
[»] chr4 (54 HSPs)
chr4 (128-384)||(27497269-27497525)
chr4 (222-486)||(27412695-27412963)
chr4 (222-458)||(27415652-27415897)
chr4 (168-376)||(27478838-27479046)
chr4 (145-376)||(27475534-27475765)
chr4 (175-420)||(27420392-27420640)
chr4 (175-409)||(27425796-27426031)
chr4 (233-376)||(27503964-27504107)
chr4 (145-345)||(27514845-27515045)
chr4 (168-337)||(27485937-27486106)
chr4 (148-380)||(27506655-27506887)
chr4 (145-360)||(27468298-27468513)
chr4 (177-414)||(27489946-27490184)
chr4 (233-359)||(27524566-27524692)
chr4 (175-489)||(27569888-27570205)
chr4 (175-376)||(27563301-27563502)
chr4 (175-376)||(27565906-27566107)
chr4 (196-360)||(27423227-27423391)
chr4 (168-311)||(27527138-27527281)
chr4 (222-358)||(27585719-27585855)
chr4 (177-376)||(27508838-27509037)
chr4 (222-341)||(17970330-17970449)
chr4 (222-360)||(27431119-27431257)
chr4 (222-330)||(27498446-27498554)
chr4 (222-341)||(27557520-27557639)
chr4 (172-338)||(27486964-27487130)
chr4 (172-338)||(27501298-27501464)
chr4 (172-338)||(27526105-27526271)
chr4 (233-338)||(27479943-27480048)
chr4 (222-338)||(27444787-27444903)
chr4 (222-338)||(27513769-27513885)
chr4 (229-339)||(27495574-27495684)
chr4 (223-331)||(27411456-27411564)
chr4 (222-314)||(27502824-27502916)
chr4 (283-340)||(27559231-27559288)
chr4 (223-340)||(27567287-27567404)
chr4 (222-338)||(27460509-27460625)
chr4 (222-325)||(27424520-27424623)
chr4 (247-338)||(27554365-27554456)
chr4 (172-338)||(27469441-27469607)
chr4 (43-80)||(27469294-27469331)
chr4 (43-80)||(27476524-27476561)
chr4 (265-338)||(27502128-27502201)
chr4 (265-338)||(27505695-27505768)
chr4 (222-330)||(27473923-27474031)
chr4 (222-338)||(27516602-27516718)
chr4 (279-338)||(27466909-27466968)
chr4 (283-330)||(27571715-27571762)
chr4 (269-338)||(27500331-27500400)
chr4 (145-210)||(27503876-27503941)
chr4 (416-453)||(27565820-27565857)
chr4 (222-311)||(27581307-27581396)
chr4 (78-126)||(27498163-27498211)
chr4 (43-79)||(27500600-27500636)
[»] chr3 (13 HSPs)
chr3 (188-341)||(55084783-55084936)
chr3 (175-338)||(38024868-38025031)
chr3 (175-338)||(38031320-38031483)
chr3 (222-337)||(38043934-38044049)
chr3 (226-345)||(50909995-50910114)
chr3 (175-337)||(50911863-50912025)
chr3 (235-380)||(38028717-38028862)
chr3 (175-336)||(38036788-38036949)
chr3 (235-380)||(38040032-38040177)
chr3 (236-341)||(48840702-48840806)
chr3 (238-338)||(50904785-50904885)
chr3 (235-380)||(38033726-38033875)
chr3 (169-210)||(38032260-38032301)
[»] chr2 (1 HSPs)
chr2 (222-341)||(3073600-3073719)
[»] chr8 (4 HSPs)
chr8 (226-380)||(21607247-21607401)
chr8 (235-380)||(21604705-21604850)
chr8 (253-341)||(21634605-21634693)
chr8 (169-210)||(21608235-21608276)
[»] chr7 (1 HSPs)
chr7 (178-210)||(21477494-21477526)


Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 75 - 522
Target Start/End: Original strand, 1754572 - 1755019
Alignment:
Q  75 aaatgcttcaaggcctgactatatatagatgaaaggttaagtaacaaacagttgggcatcagtcaccggcagacaagcaacatcgaaattagtagaagtt 174  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1754572 aaatgcttcaaggcatgactatatatagatgaaaggttaagtaacaaacagtcgggcatcagtcaccggcagacaagcaacatcgaaattagtagaagtt 1754671  T
Q  175 ccaaagggctatgttgcattgtatgttggagagaaacagaaatggcatgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtc 274  Q
    |||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1754672 ccaaagggctatgttgcagtgtatattggagagaaacagaaacggcatgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtc 1754771  T
Q  275 aagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacagaagatgtcttcgaaaatataacttctagcttaaatgggct 374  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1754772 aagctgcggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacagaagatgtcttcgaaaatataacttctagcttaaatgggct 1754871  T
Q  375 ataaatttcatacaaaagagagtgacatagtttaggagacatttttggaaactaggtatcttatcaaattgtaaagatgggaaagaaatgaggtttagat 474  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1754872 ataaatttcatacaaaagagagtgacatagtttaggagacatttttgtaaactaggtatcttatcaaattgtaaagatgggaaagaaatgaggtttagat 1754971  T
Q  475 tgacaaatttatagagtatgcannnnnnngtttcatgacaatgaattt 522  Q
    ||||||||||||||||||||||       |||||||||||||||||||    
T  1754972 tgacaaatttatagagtatgcatttttttgtttcatgacaatgaattt 1755019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 175 - 376
Target Start/End: Complemental strand, 1756913 - 1756712
Alignment:
Q  175 ccaaagggctatgttgcattgtatgttggagagaaacagaaatggcatgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtc 274  Q
    |||||||||||| ||||| || |||||||||||||||||||  ||  |||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  1756913 ccaaagggctatcttgcagtgaatgttggagagaaacagaagcggtttgtgatcccaatatcatacttgaaccaaccatcgtttcaatacttgttgagtc 1756814  T
Q  275 aagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacagaagatgtcttcgaaaatataacttctagcttaaatgggct 374  Q
    ||||||| ||||| |||||||||||||| || ||||||||||||||||||| |||||| ||||||| |||| || |||| || ||| |||| ||||||||    
T  1756813 aagctgaagaagaatttggatatgatcaccccatgggtggcctcaccattccttgcaccgaagatgccttccaacatattacctcttgcttgaatgggct 1756714  T
Q  375 at 376  Q
    ||    
T  1756713 at 1756712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 1754500 - 1754540
Alignment:
Q  40 gatttgtatatagaagactcaagtttctgattttcaaatgc 80  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  1754500 gatttgtatatagaagactcaagtttctgaatttcaaatgc 1754540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 338
Target Start/End: Original strand, 1759335 - 1759399
Alignment:
Q  274 caagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacagaaga 338  Q
    |||||||||||| | |||| |||  | |||||||||||||| |||||||||||||||| ||||||    
T  1759335 caagctgaggaacaatttgaatacaaccatccaatgggtggtctcaccattctttgcagagaaga 1759399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 9e-62; HSPs: 54)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 128 - 384
Target Start/End: Complemental strand, 27497525 - 27497269
Alignment:
Q  128 gggcatcagtcaccggcagacaagcaacatcgaaattagtagaagttccaaagggctatgttgcattgtatgttggagagaaacagaaatggcatgtgat 227  Q
    |||||||||| || |  ||||||||| |||| ||||  ||||||||||||||||||||||||||| ||||||||||||| ||||| ||  ||  ||||||    
T  27497525 gggcatcagtaactgctagacaagcatcatcaaaatctgtagaagttccaaagggctatgttgcagtgtatgttggagataaacaaaagcggtttgtgat 27497426  T
Q  228 cccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctt 327  Q
    ||| || |||||||| || ||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||| |    
T  27497425 ccctatctcatacttaaaccaaccattgtttcaatatttgttgagtcaagctgaggaagagtttggatatgatcatcccacaggtggcctcaccattcct 27497326  T
Q  328 tgcacagaagatgtcttcgaaaatataacttctagcttaaatgggctataaatttca 384  Q
    ||||| ||| |||||||| ||   ||||||||| |||| ||||||||||||||||||    
T  27497325 tgcactgaaaatgtcttccaacgcataacttctcgcttgaatgggctataaatttca 27497269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 222 - 486
Target Start/End: Original strand, 27412695 - 27412963
Alignment:
Q  222 tgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcacc 321  Q
    |||||||||||||||||||||||| |||||||  ||||||  ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27412695 tgtgatcccaatatcatacttgaaccaaccattatttcaagacttattgagtcaagctgaagaagagtttggatatgatcatccaatgggtggcctcacc 27412794  T
Q  322 attctttgcacagaagatgtcttcgaaaatataacttctagcttaaatgggctataaatttcata-caaaagagagtgacatagtttag--gagaca--t 416  Q
    |||| |||||| |||||||||||  || ||||||| ||| |||  |||||||||| ||| | | | ||||||| | |||||||||||||  ||||||  |    
T  27412795 attccttgcacggaagatgtctttcaacatataacatctcgctcgaatgggctatgaatctgacaccaaaagaaactgacatagtttagtagagacattt 27412894  T
Q  417 ttttggaaactaggtatcttatcaaattgtaaagatgggaaagaaatgaggtttagattgacaaatttat 486  Q
    ||||| |||||||| |||| || ||||||||||||||||||| || |||   ||||||||||||||||||    
T  27412895 ttttgtaaactaggcatctaatgaaattgtaaagatgggaaa-aagtgactattagattgacaaatttat 27412963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 222 - 458
Target Start/End: Original strand, 27415652 - 27415897
Alignment:
Q  222 tgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcacc 321  Q
    ||||||||| |||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  27415652 tgtgatccccatatcatacttgaaccaaccatcgtttcaagacttgttgagtcaagctgaggaagagtttggatatgatcattccatgggtggcctcacc 27415751  T
Q  322 attctttgcacagaagatgtcttcgaaaatataacttctagcttaaatgggctataaattt--catacaaaagagagtgacatagtttag-------gag 412  Q
    |||| ||||||||||||||||||  || | ||||| ||| |||| || ||  ||| ||| |  || | |||||||| |||||||||||||       |||    
T  27415752 attccttgcacagaagatgtctttcaacacataacatctcgcttgaacggaatatgaatctaacacaaaaaagagactgacatagtttagtagactagag 27415851  T
Q  413 acatttttggaaactaggtatcttatcaaattgtaaagatgggaaa 458  Q
    ||||||||| ||||||||  | ||||||||||||||||||||||||    
T  27415852 acatttttgtaaactaggcctgttatcaaattgtaaagatgggaaa 27415897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 168 - 376
Target Start/End: Complemental strand, 27479046 - 27478838
Alignment:
Q  168 agaagttccaaagggctatgttgcattgtatgttggagagaaacagaaatggcatgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttg 267  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||  ||  |||  ||||||||||||||||||| ||||||| |||||||   |||    
T  27479046 agaagttccaaagggctatgttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattg 27478947  T
Q  268 ttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacagaagatgtcttcgaaaatataacttctagcttaa 367  Q
     |   |||||| || ||||| ||||||||||||||||| ||||||||||||||||||| |||| | |||||||| ||| || ||||||||||| |||| |    
T  27478946 ctacatcaagcggaagaagaatttggatatgatcatcccatgggtggcctcaccattccttgctccgaagatgtgttccaacatataacttcttgcttga 27478847  T
Q  368 atgggctat 376  Q
    |||||||||    
T  27478846 atgggctat 27478838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 145 - 376
Target Start/End: Complemental strand, 27475765 - 27475534
Alignment:
Q  145 agacaagcaacatcgaaattagtagaagttccaaagggctatgttgcattgtatgttggagagaaacagaaatggcatgtgatcccaatatcatacttga 244  Q
    |||||| ||||||| |||| |||||||||   |||||||||||||||  |||||||||||||||||  |    ||  |||  | ||  ||||||||||||    
T  27475765 agacaaacaacatcaaaatcagtagaagtgaaaaagggctatgttgccgtgtatgttggagagaaattggcgcggtttgtagttcctgtatcatacttga 27475666  T
Q  245 atcaaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacagaagatgtctt 344  Q
    ||||||| || ||||||  ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||| | |||||||||||    
T  27475665 atcaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgctccgaagatgtctt 27475566  T
Q  345 cgaaaatataacttctagcttaaatgggctat 376  Q
    | || ||||||||||| |||| ||||||||||    
T  27475565 ccaacatataacttcttgcttgaatgggctat 27475534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 175 - 420
Target Start/End: Original strand, 27420392 - 27420640
Alignment:
Q  175 ccaaagggctatgttgcattgtatgttggagagaaacagaaatggcatgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtc 274  Q
    |||||||| ||| ||||| | |||||||||||||||||||   || || | |||||  ||||||||||||  ||||| || ||||||  |||| ||||||    
T  27420392 ccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatttaatccccgtatcatacttgagccaaccttcatttcaaggcttgctgagtc 27420491  T
Q  275 aagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacagaagatgtcttcgaaaatataacttctagcttaaatgggct 374  Q
    ||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||  || ||||||||||| |||| ||||||||    
T  27420492 aagttgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgcacggaagatgtctttcaacatataacttcttgcttcaatgggct 27420591  T
Q  375 ataaatttcata-caaaagagagtgacatagtttag--gagacattttt 420  Q
    || ||| | | | ||||||||  |||||||||||||  |||||||||||    
T  27420592 atgaatctgagaccaaaagagtctgacatagtttagtagagacattttt 27420640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 175 - 409
Target Start/End: Original strand, 27425796 - 27426031
Alignment:
Q  175 ccaaagggctatgttgcattgtatgttggagagaaacagaaatggcatgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtc 274  Q
    |||||||| ||| ||||| | ||||||||||||||||| ||  || ||||||||||||||||||||||||| |||||||| ||||||  ||| |||||||    
T  27425796 ccaaagggatatcttgcagtatatgttggagagaaacaaaagcggtatgtgatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtc 27425895  T
Q  275 aagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacagaagatgtcttcgaaaatataacttctagcttaaatgggct 374  Q
    ||  ||||||||||||||||||||||||||| ||||||||||||||||||| |||||| || ||||| ||  || |||| || ||| |||| ||||| ||    
T  27425896 aatttgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgcaccgaggatgtatttcaacatatgacatctcgcttgaatggcct 27425995  T
Q  375 ataaatttcata-caaaagagagtgacatagtttag 409  Q
    || ||| | | | ||||| ||| |||||||||||||    
T  27425996 atgaatctgacaccaaaacagactgacatagtttag 27426031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 233 - 376
Target Start/End: Original strand, 27503964 - 27504107
Alignment:
Q  233 tatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcac 332  Q
    ||||||||||||| ||||| || ||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27503964 tatcatacttgaaccaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgcac 27504063  T
Q  333 agaagatgtcttcgaaaatataacttctagcttaaatgggctat 376  Q
     |||||||||||| || | ||||||||| |||| ||||| ||||    
T  27504064 cgaagatgtcttccaacacataacttcttgcttgaatggactat 27504107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 145 - 345
Target Start/End: Original strand, 27514845 - 27515045
Alignment:
Q  145 agacaagcaacatcgaaattagtagaagttccaaagggctatgttgcattgtatgttggagagaaacagaaatggcatgtgatcccaatatcatacttga 244  Q
    |||||||||||||| ||||  ||||||||   |||||||||||||||  |||||||||||||||||| |    ||  |||  ||||  ||||||||||||    
T  27514845 agacaagcaacatcaaaatctgtagaagtgagaaagggctatgttgcggtgtatgttggagagaaactggtgcggtttgtagtccctgtatcatacttga 27514944  T
Q  245 atcaaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacagaagatgtctt 344  Q
    ||||||| || ||||||  ||||||||||||| | |||||||| ||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||    
T  27514945 atcaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggcctcaccattccttgtacagaagatgtctt 27515044  T
Q  345 c 345  Q
    |    
T  27515045 c 27515045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 168 - 337
Target Start/End: Complemental strand, 27486106 - 27485937
Alignment:
Q  168 agaagttccaaagggctatgttgcattgtatgttggagagaaacagaaatggcatgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttg 267  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||  ||  |||  ||||||||||||||||||| ||||||| |||||||   |||    
T  27486106 agaagttccaaagggctatgttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattg 27486007  T
Q  268 ttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacagaag 337  Q
     |   |||||| || ||||| ||||||||||||||||| ||||||||||||||||||| |||||| ||||    
T  27486006 ctacatcaagcggaagaagaatttggatatgatcatcccatgggtggcctcaccattccttgcactgaag 27485937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 148 - 380
Target Start/End: Original strand, 27506655 - 27506887
Alignment:
Q  148 caagcaacatcgaaattagtagaagttccaaagggctatgttgcattgtatgttggagagaaacagaaatggcatgtgatcccaatatcatacttgaatc 247  Q
    |||||| |||| |||| || || |||||||||||||||||||||| | ||||| |||||||||||||   ||  ||||||||||||||||||||| || |    
T  27506655 caagcagcatcaaaatcagcaggagttccaaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaacc 27506754  T
Q  248 aaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacagaagatgtcttcga 347  Q
    |||||| |||||||   ||| |   |||||| || ||||| ||||||||||||||||| |||||||| |||||||||| |||||| |||||||||||  |    
T  27506755 aaccattgtttcaagaattgctacatcaagcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttca 27506854  T
Q  348 aaatataacttctagcttaaatgggctataaat 380  Q
    | | ||||||||| |||| |||| || ||||||    
T  27506855 acacataacttcttgcttgaatgagccataaat 27506887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 145 - 360
Target Start/End: Complemental strand, 27468513 - 27468298
Alignment:
Q  145 agacaagcaacatcgaaattagtagaagttccaaagggctatgttgcattgtatgttggagagaaacagaaatggcatgtgatcccaatatcatacttga 244  Q
    |||||||||||||| ||||  ||||||||   |||||||||||||||  |||||||||||||||||| |    ||  |||  ||||  |||||||||| |    
T  27468513 agacaagcaacatcaaaatctgtagaagtgagaaagggctatgttgcggtgtatgttggagagaaactggtgcggtttgtagtccctgtatcatacttaa 27468414  T
Q  245 atcaaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacagaagatgtctt 344  Q
    | ||||| || ||||||  ||||||||||||| | |||||||| ||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||    
T  27468413 accaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggcctcaccattccttgcacggaagatgtctt 27468314  T
Q  345 cgaaaatataacttct 360  Q
    | || |||||| ||||    
T  27468313 ccaacatataatttct 27468298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 177 - 414
Target Start/End: Original strand, 27489946 - 27490184
Alignment:
Q  177 aaagggctatgttgcattgtatgttggagagaaacagaaatggcatgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtcaa 276  Q
    |||||||||||||| | ||||||||||||||||||| ||| ||  |||  ||||  | |||||||| ||  ||||||| ||||||   ||||||| ||||    
T  27489946 aaagggctatgttgtagtgtatgttggagagaaacaaaaacggtttgtagtccctgtgtcatacttaaacaaaccatcatttcaagatttgttgaatcaa 27490045  T
Q  277 gctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacagaagatgtcttcgaaaatataacttctagcttaaatgggctat 376  Q
    || |||||||||||||||||||||||||||||||||||||||||||||| |  ||  ||||||| |||| || | |||| |||| |||| |||||||| |    
T  27490046 gccgaggaagagtttggatatgatcatccaatgggtggcctcaccattcctgtcaacgaagatgacttccaatacataatttctcgctttaatgggctgt 27490145  T
Q  377 aaatttcatac-aaaagagagtgacatagtttaggagac 414  Q
    ||| |||||||   |||||| ||||||||||||| ||||    
T  27490146 aaacttcatactgcaagagactgacatagtttagtagac 27490184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 233 - 359
Target Start/End: Original strand, 27524566 - 27524692
Alignment:
Q  233 tatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcac 332  Q
    ||||||| ||||| ||||| || ||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  27524566 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccgtgcac 27524665  T
Q  333 agaagatgtcttcgaaaatataacttc 359  Q
     |||||||||||| || ||||||||||    
T  27524666 cgaagatgtcttccaacatataacttc 27524692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 175 - 489
Target Start/End: Complemental strand, 27570205 - 27569888
Alignment:
Q  175 ccaaagggctatgttgcattgtatgttggagagaaacagaaatggcatgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtc 274  Q
    |||||||| ||| ||||| | |||||||||||||||||||   || ||||||||||  |||||||||| |  ||||| || ||||||  |||| ||||||    
T  27570205 ccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgctgagtc 27570106  T
Q  275 aagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacagaagatgtcttcgaaaatataacttctagcttaaatgggct 374  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||| |||||| ||||  || ||||||| ||| || | || ||| |    
T  27570105 aagctgaggaagagttcggatatgatcatcccatgggtggcctcaccattccttgcaccgaagatatctttcaacatataacatctcgcatgaacgggat 27570006  T
Q  375 ataaatttcata-caaaagagagtgacatagtttag----gagacatttttggaaactaggtatcttatcaaattgtaaagatgggaaagaaatgaggtt 469  Q
    || ||| | | | || |||||| |||||||||||||    || |  |||||| |||||  | |||||| ||||||||||||||| |||| ||||||   |    
T  27570005 atgaatctaacaccagaagagactgacatagtttagtagtgatatttttttgtaaact-cgcatcttaacaaattgtaaagatgagaaa-aaatgaccat 27569908  T
Q  470 tagattgacaaatttataga 489  Q
    |||||||| |||||||||||    
T  27569907 tagattgagaaatttataga 27569888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 175 - 376
Target Start/End: Complemental strand, 27563502 - 27563301
Alignment:
Q  175 ccaaagggctatgttgcattgtatgttggagagaaacagaaatggcatgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtc 274  Q
    |||||||||||| ||||| |||| |||||||| ||||| ||  |   |||||||||  ||||||||||||| ||| ||| |||||||   ||| ||||||    
T  27563502 ccaaagggctatcttgcagtgtacgttggagataaacaaaagagaattgtgatccccgtatcatacttgaaccaaacattgtttcaagatttgctgagtc 27563403  T
Q  275 aagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacagaagatgtcttcgaaaatataacttctagcttaaatgggct 374  Q
    |||| || |||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||| |||  || ||||||||||| |||| |||| |||    
T  27563402 aagccgaagaagagtttggatatgatcatccaatgggtggcctcacaattccttgcactgaagatgcctttcaacatataacttctcgcttgaatgagct 27563303  T
Q  375 at 376  Q
    ||    
T  27563302 at 27563301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 175 - 376
Target Start/End: Complemental strand, 27566107 - 27565906
Alignment:
Q  175 ccaaagggctatgttgcattgtatgttggagagaaacagaaatggcatgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtc 274  Q
    |||||||| ||| ||||| ||||||||||||||||||| ||  |   ||||||||| ||||||||| |||| ||||||| |||||||  |||| |||  |    
T  27566107 ccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccattgtttcaagacttgctgatac 27566008  T
Q  275 aagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacagaagatgtcttcgaaaatataacttctagcttaaatgggct 374  Q
    ||| ||||||||||  ||||||||||||||||||||||||||||||||||| |||    |||||||||||| || ||||||||||| |||| ||||| ||    
T  27566007 aagttgaggaagagcatggatatgatcatccaatgggtggcctcaccattccttgtggcgaagatgtcttccaacatataacttcttgcttgaatggact 27565908  T
Q  375 at 376  Q
    ||    
T  27565907 at 27565906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 196 - 360
Target Start/End: Original strand, 27423227 - 27423391
Alignment:
Q  196 tatgttggagagaaacagaaatggcatgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggat 295  Q
    ||||||||| ||||||||| | ||||||||||||  |||||||||||||| ||||| || ||||||   |||||||||||||| |||||||||||||| |    
T  27423227 tatgttggatagaaacagacacggcatgtgatccgcatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggtt 27423326  T
Q  296 atgatcatccaatgggtggcctcaccattctttgcacagaagatgtcttcgaaaatataacttct 360  Q
    |  ||||||| ||||||||||||||| ||| |||||| |||||||| ||| || |||||||||||    
T  27423327 acaatcatcccatgggtggcctcaccgttccttgcacggaagatgttttccaacatataacttct 27423391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 168 - 311
Target Start/End: Original strand, 27527138 - 27527281
Alignment:
Q  168 agaagttccaaagggctatgttgcattgtatgttggagagaaacagaaatggcatgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttg 267  Q
    |||||| |||||||||||| ||||  ||||||||||||| ||||||||| ||  |||||||||||||||| |||| || ||||||||||||| |   |||    
T  27527138 agaagtaccaaagggctatcttgcggtgtatgttggagataaacagaaacggtttgtgatcccaatatcacacttaaaccaaccatcgtttctagagttg 27527237  T
Q  268 ttgagtcaagctgaggaagagtttggatatgatcatccaatggg 311  Q
     ||||||||||||||||||||||||||||||||||||| |||||    
T  27527238 ctgagtcaagctgaggaagagtttggatatgatcatcccatggg 27527281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 222 - 358
Target Start/End: Original strand, 27585719 - 27585855
Alignment:
Q  222 tgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcacc 321  Q
    |||||||||  ||||||||||||| ||||||| |||||||   ||| |||||||||| || ||||||||||||||||||||||||||||| || ||||||    
T  27585719 tgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgatgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcacc 27585818  T
Q  322 attctttgcacagaagatgtcttcgaaaatataactt 358  Q
    |||| |||||||||||||| |||| || |||||||||    
T  27585819 attccttgcacagaagatgccttcaaacatataactt 27585855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 177 - 376
Target Start/End: Original strand, 27508838 - 27509037
Alignment:
Q  177 aaagggctatgttgcattgtatgttggagagaaacagaaatggcatgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtcaa 276  Q
    |||||||||||||||| |||||||||||||||||| ||   |   |||  | ||  | ||||| ||||| ||||| || ||||||  |||||||| |||     
T  27508838 aaagggctatgttgcagtgtatgttggagagaaactgacgcgttttgtcgttcctgtgtcatatttgaaccaaccttcatttcaagacttgttgaatcag 27508937  T
Q  277 gctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacagaagatgtcttcgaaaatataacttctagcttaaatgggctat 376  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||  ||| | |||||||| ||| || ||||||||||| |||| ||||| ||||    
T  27508938 gctgaggaagagtttggatatgatcatccaacgggtggcctcaccattccatgctccgaagatgtgttccaacatataacttcttgcttcaatggactat 27509037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 222 - 341
Target Start/End: Original strand, 17970330 - 17970449
Alignment:
Q  222 tgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcacc 321  Q
    ||||||||| |  ||||||||||| ||| | || ||||||| |||| ||||||  || |||||||| || ||||| |||||||||||||||||||||||     
T  17970330 tgtgatccctacgtcatacttgaaccaaacttcatttcaatacttgctgagtcgggcagaggaagaattcggatacgatcatccaatgggtggcctcaca 17970429  T
Q  322 attctttgcacagaagatgt 341  Q
    |||| |||||||||||||||    
T  17970430 attccttgcacagaagatgt 17970449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 222 - 360
Target Start/End: Complemental strand, 27431257 - 27431119
Alignment:
Q  222 tgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcacc 321  Q
    |||||||||||||||||||||||| ||||| || ||||||   ||||||| |||||| |||||| | ||||||||||| |||||||  ||||| |||||     
T  27431257 tgtgatcccaatatcatacttgaaccaaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaaccggtggtctcaca 27431158  T
Q  322 attctttgcacagaagatgtcttcgaaaatataacttct 360  Q
    |||| ||||| |||||| || |||  |||||| ||||||    
T  27431157 attccttgcagagaagacgttttcttaaatattacttct 27431119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 222 - 330
Target Start/End: Original strand, 27498446 - 27498554
Alignment:
Q  222 tgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcacc 321  Q
    ||||||||| |||||||||||||| ||||||||||| |||  ||||||||  ||||| |||||| | || | ||||||||||||||||||||| |||||     
T  27498446 tgtgatccctatatcatacttgaaccaaccatcgttccaagacttgttgaaccaagccgaggaacaattcgaatatgatcatccaatgggtggtctcact 27498545  T
Q  322 attctttgc 330  Q
    |||| ||||    
T  27498546 attccttgc 27498554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 222 - 341
Target Start/End: Original strand, 27557520 - 27557639
Alignment:
Q  222 tgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcacc 321  Q
    |||||||||||| |||||||| || |||||||| ||||||   ||| ||| ||||||||||||| | |||| ||||| ||||||||||||||| |||||     
T  27557520 tgtgatcccaatgtcatacttaaaccaaccatcatttcaagaattgctgaatcaagctgaggaacaatttgaatatgttcatccaatgggtggtctcact 27557619  T
Q  322 attctttgcacagaagatgt 341  Q
    ||||  |||| |||||||||    
T  27557620 attccatgcagagaagatgt 27557639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 172 - 338
Target Start/End: Original strand, 27486964 - 27487130
Alignment:
Q  172 gttccaaagggctatgttgcattgtatgttggagagaaacagaaatggcatgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttga 271  Q
    ||||||||||| ||| | ||| |||| || |||||||||  |||  ||  |||||||||  |||||||||| || |||||||||||||||   |||||||    
T  27486964 gttccaaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgatccctttatcatacttaaaccaaccatcgtttcaagaattgttga 27487063  T
Q  272 gtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacagaaga 338  Q
      |||||||| ||| | |||| ||||||||||||||||||||| || || |||| ||||| ||||||    
T  27487064 accaagctgaagaacaatttgaatatgatcatccaatgggtggtcttactattccttgcaaagaaga 27487130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 172 - 338
Target Start/End: Original strand, 27501298 - 27501464
Alignment:
Q  172 gttccaaagggctatgttgcattgtatgttggagagaaacagaaatggcatgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttga 271  Q
    ||||||||||| | | | ||| | |||||||||||| ||  |||| ||  ||||||||||||||||||||| || ||||||| |||||||  ||||||||    
T  27501298 gttccaaagggatgtctagcagtatatgttggagaggaaatgaaacggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagacttgttga 27501397  T
Q  272 gtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacagaaga 338  Q
      ||||| |||||| | |||| ||| |||||||||| |||||| ||||| |||| ||| | ||||||    
T  27501398 accaagccgaggaacaatttgaatacgatcatccaacgggtggtctcactattccttgtagagaaga 27501464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 172 - 338
Target Start/End: Complemental strand, 27526271 - 27526105
Alignment:
Q  172 gttccaaagggctatgttgcattgtatgttggagagaaacagaaatggcatgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttga 271  Q
    ||||||||||| ||| | ||| |||||||||||||||||  |||  ||  |||||| ||  ||||||||||||| ||| | || || |||   |||||||    
T  27526271 gttccaaagggatatctagcagtgtatgttggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaattgttga 27526172  T
Q  272 gtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacagaaga 338  Q
    | |||||||||||| | |||| |||||||||||||| |||||| ||||| |||| ||||| ||||||    
T  27526171 gccaagctgaggaacaatttgaatatgatcatccaacgggtggtctcactattccttgcagagaaga 27526105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 233 - 338
Target Start/End: Original strand, 27479943 - 27480048
Alignment:
Q  233 tatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcac 332  Q
    ||||||||||||| ||| |||| || |||   |||||||  |||||||||||| | |||| ||||||||||||||||||||| |||||||||| |||||     
T  27479943 tatcatacttgaaccaaacatcattccaaaagttgttgaaccaagctgaggaacaatttgaatatgatcatccaatgggtggtctcaccattccttgcag 27480042  T
Q  333 agaaga 338  Q
    ||||||    
T  27480043 agaaga 27480048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 222 - 338
Target Start/End: Complemental strand, 27444903 - 27444787
Alignment:
Q  222 tgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcacc 321  Q
    |||||||||||||||||||||||  ||| |||| ||||||   || |||| |||||| |||||| | || |||||||| |||||||||||||| |||||     
T  27444903 tgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcaca 27444804  T
Q  322 attctttgcacagaaga 338  Q
    |||| ||||| ||||||    
T  27444803 attccttgcagagaaga 27444787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 222 - 338
Target Start/End: Complemental strand, 27513885 - 27513769
Alignment:
Q  222 tgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcacc 321  Q
    |||||||||||||||||||||||| ||| | ||||| |||   |||||||  |||||||| ||| | | || ||||||||||||||||||||| |||||     
T  27513885 tgtgatcccaatatcatacttgaaccaaacctcgttccaagaattgttgaaccaagctgaagaacaatatgaatatgatcatccaatgggtggtctcact 27513786  T
Q  322 attctttgcacagaaga 338  Q
    |||| ||||| ||||||    
T  27513785 attccttgcagagaaga 27513769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 229 - 339
Target Start/End: Original strand, 27495574 - 27495684
Alignment:
Q  229 ccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattcttt 328  Q
    ||||||||||||||| |||||||  | ||||||   ||| |  || ||||||| ||||||||||||| | |||||||||||||||| |||||||||| ||    
T  27495574 ccaatatcatacttgcatcaacctgcttttcaacaattgctaggtaaagctgaagaagagtttggatttaatcatccaatgggtggtctcaccattcctt 27495673  T
Q  329 gcacagaagat 339  Q
    ||| |||||||    
T  27495674 gcagagaagat 27495684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 223 - 331
Target Start/End: Complemental strand, 27411564 - 27411456
Alignment:
Q  223 gtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcacca 322  Q
    ||||| ||| ||||||||||||| |||||||||||||||   ||  | | |||||| || ||||| ||||||||||||||||| |||||||| ||||| |    
T  27411564 gtgattccagtatcatacttgaaccaaccatcgtttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaa 27411465  T
Q  323 ttctttgca 331  Q
    ||| |||||    
T  27411464 ttccttgca 27411456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 222 - 314
Target Start/End: Complemental strand, 27502916 - 27502824
Alignment:
Q  222 tgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtgg 314  Q
    |||||| ||||| ||||| ||||||||| | || ||||||  |||| |||| ||||||| |||||| ||||||||||| ||||||||||||||    
T  27502916 tgtgattccaatgtcatatttgaatcaaacttcatttcaagacttgctgagccaagctgtggaagaatttggatatgaccatccaatgggtgg 27502824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 340
Target Start/End: Complemental strand, 27559288 - 27559231
Alignment:
Q  283 gaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacagaagatg 340  Q
    |||||||||||||||||||||||||||||||| ||||| |||| |||||  |||||||    
T  27559288 gaagagtttggatatgatcatccaatgggtggtctcacaattccttgcagtgaagatg 27559231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 340
Target Start/End: Original strand, 27567287 - 27567404
Alignment:
Q  223 gtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcacca 322  Q
    ||||| ||| ||||||||||||| |||||||||||||||   ||  | | |||| | || ||||| ||||| |||||||||||||||||||| ||||| |    
T  27567287 gtgattccagtatcatacttgaaccaaccatcgtttcaagaattactaaatcaaacagaagaagaatttggttatgatcatccaatgggtggtctcacaa 27567386  T
Q  323 ttctttgcacagaagatg 340  Q
    ||| |||||  |||||||    
T  27567387 ttccttgcagcgaagatg 27567404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 338
Target Start/End: Original strand, 27460509 - 27460625
Alignment:
Q  222 tgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcacc 321  Q
    ||||||||| |||||||| ||||| |||  ||| || |||   ||| |||| |||  ||||||| | |||| ||||||||||||||||||||| ||||||    
T  27460509 tgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaacaatttgaatatgatcatccaatgggtggtctcacc 27460608  T
Q  322 attctttgcacagaaga 338  Q
    |||| ||||| ||||||    
T  27460609 attccttgcagagaaga 27460625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 222 - 325
Target Start/End: Complemental strand, 27424623 - 27424520
Alignment:
Q  222 tgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcacc 321  Q
    |||||| ||| ||||||||||||| ||||| || ||||||   ||| | | |||| |||| ||||| | |||||||||||||||||||||||| || |||    
T  27424623 tgtgattccagtatcatacttgaaccaaccttcatttcaagaattgctaaatcaatctgaagaagaatatggatatgatcatccaatgggtggtcttacc 27424524  T
Q  322 attc 325  Q
    ||||    
T  27424523 attc 27424520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 27554365 - 27554456
Alignment:
Q  247 caaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacagaaga 338  Q
    |||||||||||||||   ||| ||| ||||||||||||| | ||||||||||||||||||| |||| | ||||| |||| ||| | ||||||    
T  27554365 caaccatcgtttcaagaattgctgaatcaagctgaggaacaatttggatatgatcatccaacgggtagtctcacaattccttgtagagaaga 27554456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 338
Target Start/End: Original strand, 27469441 - 27469607
Alignment:
Q  172 gttccaaagggctatgttgcattgtatgttggagagaaacagaaatggcatgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttga 271  Q
    ||||||||||| ||| | ||| |||| || |||||||||  |||  ||  ||||||||| |||||||| ||||| ||| |||| || |||    ||||||    
T  27469441 gttccaaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgatccctatatcatatttgaagcaaacatcattacaagaactgttga 27469540  T
Q  272 gtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacagaaga 338  Q
    | |||||||| ||| | |||| |||||| |||||||||||||| || || |||| ||||| ||||||    
T  27469541 gccaagctgaagaacaatttgaatatgaacatccaatgggtggtctaactattccttgcagagaaga 27469607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 27469331 - 27469294
Alignment:
Q  43 ttgtatatagaagactcaagtttctgattttcaaatgc 80  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  27469331 ttgtatatagaagactcaagtttctgaatttcaaatgc 27469294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 27476561 - 27476524
Alignment:
Q  43 ttgtatatagaagactcaagtttctgattttcaaatgc 80  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  27476561 ttgtatatagaagactcaagtttctgaatttcaaatgc 27476524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 265 - 338
Target Start/End: Complemental strand, 27502201 - 27502128
Alignment:
Q  265 ttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacagaaga 338  Q
    |||||||  |||||||||||| | |||| ||||||||||||||||||||| || || |||| ||||| ||||||    
T  27502201 ttgttgaaccaagctgaggaacaatttgaatatgatcatccaatgggtggtctaactattccttgcagagaaga 27502128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 265 - 338
Target Start/End: Complemental strand, 27505768 - 27505695
Alignment:
Q  265 ttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacagaaga 338  Q
    |||||||  |||||||||||| | |||| |||||| |||||||||||||| ||||| |||| ||||| ||||||    
T  27505768 ttgttgaaccaagctgaggaacaatttgaatatgaccatccaatgggtggtctcactattccttgcagagaaga 27505695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 330
Target Start/End: Original strand, 27473923 - 27474031
Alignment:
Q  222 tgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcacc 321  Q
    ||||||||| |||||||| ||||| |||  ||| || |||   ||| |||| |||  ||||||| | |||| ||||||||||||||||||||| ||||||    
T  27473923 tgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaacaatttgaatatgatcatccaatgggtggtctcacc 27474022  T
Q  322 attctttgc 330  Q
    |||| ||||    
T  27474023 attccttgc 27474031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 338
Target Start/End: Complemental strand, 27516718 - 27516602
Alignment:
Q  222 tgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcacc 321  Q
    ||||||||| |||||||| ||||| |||  ||| || |||   |||||||  |||||||||||| | |||| |||||| ||||||||||| || |||||     
T  27516718 tgtgatccctatatcatatttgaagcaaaaatcattccaagaattgttgaaccaagctgaggaacaatttgaatatgaccatccaatggggggtctcact 27516619  T
Q  322 attctttgcacagaaga 338  Q
    |||| ||||| ||||||    
T  27516618 attccttgcaaagaaga 27516602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 338
Target Start/End: Original strand, 27466909 - 27466968
Alignment:
Q  279 tgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacagaaga 338  Q
    ||||||| | |||| ||||||||||||||||||||| ||||| |||| ||||| ||||||    
T  27466909 tgaggaacaatttgaatatgatcatccaatgggtggtctcactattccttgcagagaaga 27466968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 330
Target Start/End: Original strand, 27571715 - 27571762
Alignment:
Q  283 gaagagtttggatatgatcatccaatgggtggcctcaccattctttgc 330  Q
    ||||| |||||||||||||||||||||||||| ||||| |||| ||||    
T  27571715 gaagaatttggatatgatcatccaatgggtggtctcacaattccttgc 27571762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 338
Target Start/End: Complemental strand, 27500400 - 27500331
Alignment:
Q  269 tgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacagaaga 338  Q
    |||| ||| |||| ||| |||| |||||||| ||||||||||||||| |||| |||| ||||| ||||||    
T  27500400 tgagccaatctgaagaacagttcggatatgaccatccaatgggtggcatcactattccttgcagagaaga 27500331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 27503876 - 27503941
Alignment:
Q  145 agacaagcaacatcgaaattagtagaagttccaaagggctatgttgcattgtatgttggagagaaa 210  Q
    |||||| ||||||| |||| |||||||||   ||||||||||||| |  |||||||||||||||||    
T  27503876 agacaaacaacatcaaaatcagtagaagtgaaaaagggctatgtttccgtgtatgttggagagaaa 27503941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 453
Target Start/End: Complemental strand, 27565857 - 27565820
Alignment:
Q  416 tttttggaaactaggtatcttatcaaattgtaaagatg 453  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  27565857 tttttgtaaactaggcatcttatcaaattgtaaagatg 27565820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 311
Target Start/End: Original strand, 27581307 - 27581396
Alignment:
Q  222 tgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatggg 311  Q
    |||| |||||||||| |||||||| |||||   ||||||  |||||||| ||   ||||||||||||||||| | ||| |||||||||||    
T  27581307 tgtggtcccaatatcgtacttgaagcaacctatgtttcaggccttgttgtgttgtgctgaggaagagtttggttttgaacatccaatggg 27581396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 27498211 - 27498163
Alignment:
Q  78 tgcttcaaggcctgactatatatagatgaaaggttaagtaacaaacagt 126  Q
    ||||| ||||| ||| ||||||||||||||||| || ||||||||||||    
T  27498211 tgcttgaaggcatgaatatatatagatgaaaggatatgtaacaaacagt 27498163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 27500600 - 27500636
Alignment:
Q  43 ttgtatatagaagactcaagtttctgattttcaaatg 79  Q
    |||||||||||||| |||||||||||| |||||||||    
T  27500600 ttgtatatagaagagtcaagtttctgaatttcaaatg 27500636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 188 - 341
Target Start/End: Original strand, 55084783 - 55084936
Alignment:
Q  188 ttgcattgtatgttggagagaaacagaaatggcatgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgaggaaga 287  Q
    ||||| |||||||||||||||||  |||  ||  ||||||||| || || |||||||| |||||||| ||||||  |||||||||||  || ||||||||    
T  55084783 ttgcagtgtatgttggagagaaaatgaagcggtttgtgatccctatgtcttacttgaaccaaccatcatttcaagacttgttgagtcgggcggaggaaga 55084882  T
Q  288 gtttggatatgatcatccaatgggtggcctcaccattctttgcacagaagatgt 341  Q
     |||||||| ||||||||||||||||||||||| |||| |||||||||||||||    
T  55084883 atttggatacgatcatccaatgggtggcctcacaattccttgcacagaagatgt 55084936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 175 - 338
Target Start/End: Complemental strand, 38025031 - 38024868
Alignment:
Q  175 ccaaagggctatgttgcattgtatgttggagagaaacagaaatggcatgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtc 274  Q
    |||||||||||| ||||| | |||||||||||| ||  |||  ||  ||| ||||| || ||||||||||| ||| | || ||||||  ||| |||||||    
T  38025031 ccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtc 38024932  T
Q  275 aagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacagaaga 338  Q
    |||| |||||||| |||||||||||||| ||||||||||||||||| |||| ||||||||||||    
T  38024931 aagcagaggaagaatttggatatgatcacccaatgggtggcctcacgattccttgcacagaaga 38024868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 175 - 338
Target Start/End: Complemental strand, 38031483 - 38031320
Alignment:
Q  175 ccaaagggctatgttgcattgtatgttggagagaaacagaaatggcatgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtc 274  Q
    |||||||||||| ||||| | |||||||||||| ||  |||  ||  ||| ||||| || ||||||||||| ||| | || ||||||  ||| |||||||    
T  38031483 ccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtc 38031384  T
Q  275 aagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacagaaga 338  Q
    |||| |||||||| |||||||||||||| ||||||||||||||||| |||| ||||||||||||    
T  38031383 aagcagaggaagaatttggatatgatcacccaatgggtggcctcacgattccttgcacagaaga 38031320  T

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Target: chr3; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 222 - 337
Target Start/End: Original strand, 38043934 - 38044049
Alignment:
Q  222 tgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcacc 321  Q
    ||||||||| || ||||||||||||||| | |||||||||  |||| |||||||||| |||||||| ||||||||||||||||||||||| ||||||||     
T  38043934 tgtgatccctatgtcatacttgaatcaaacttcgtttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatccaatgggcggcctcaca 38044033  T
Q  322 attctttgcacagaag 337  Q
    |||| |||||| ||||    
T  38044034 attccttgcaccgaag 38044049  T

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Target: chr3; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 226 - 345
Target Start/End: Original strand, 50909995 - 50910114
Alignment:
Q  226 atcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattc 325  Q
    ||||| || ||||||||||| ||| | || ||||||  |||||||| |||||  |||||||| |||||||||||||||||||||||||||||||| ||||    
T  50909995 atccccatgtcatacttgaaccaagcttcatttcaaaacttgttgaatcaagtggaggaagaatttggatatgatcatccaatgggtggcctcacaattc 50910094  T
Q  326 tttgcacagaagatgtcttc 345  Q
     |||||||||||||||||||    
T  50910095 cttgcacagaagatgtcttc 50910114  T

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Target: chr3; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 175 - 337
Target Start/End: Complemental strand, 50912025 - 50911863
Alignment:
Q  175 ccaaagggctatgttgcattgtatgttggagagaaacagaaatggcatgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtc 274  Q
    |||||||||||| ||||  | ||||||||||| ||   |||| ||  ||||||||| |  ||||||||||| ||| | || ||||||  |||||||||||    
T  50912025 ccaaagggctatcttgcggtatatgttggagacaagatgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaaaacttgttgagtc 50911926  T
Q  275 aagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacagaag 337  Q
    |||| |||||||| |||||||||||||| |||||||||||||| || |||| |||||||||||    
T  50911925 aagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgcacagaag 50911863  T

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Target: chr3; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 235 - 380
Target Start/End: Complemental strand, 38028862 - 38028717
Alignment:
Q  235 tcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacag 334  Q
    ||||||||||| ||| | || ||||||  | ||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||| |||| ||||||||    
T  38028862 tcatacttgaaccaagcttcatttcaaaacctgttgagtcaagccgaggaagaatttggatatgaccatccaatgggcggcctcacaattccttgcacag 38028763  T
Q  335 aagatgtcttcgaaaatataacttctagcttaaatgggctataaat 380  Q
    |||| || |||    |||| ||||||  ||| ||||||||||||||    
T  38028762 aagacgttttcttgcatattacttctcacttcaatgggctataaat 38028717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 175 - 336
Target Start/End: Complemental strand, 38036949 - 38036788
Alignment:
Q  175 ccaaagggctatgttgcattgtatgttggagagaaacagaaatggcatgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtc 274  Q
    |||||||||||| ||||| |||| ||||||||| ||  |||| ||  |||  |||| ||  |||||||||| ||| | || ||||||   ||||||||||    
T  38036949 ccaaagggctatcttgcagtgtacgttggagagcaaatgaaacggtttgttgtccccatgccatacttgaaccaagcttcatttcaaaatttgttgagtc 38036850  T
Q  275 aagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacagaa 336  Q
    |||| |||||||| || |||||||| ||||||||||| |||||||| |||| ||||||||||    
T  38036849 aagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccttgcacagaa 38036788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 235 - 380
Target Start/End: Complemental strand, 38040177 - 38040032
Alignment:
Q  235 tcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacag 334  Q
    ||||||||||| ||| | || ||||||  | ||||||||||||| |||||||| || |||||||| ||||||||||| |||||||| |||| ||||||||    
T  38040177 tcatacttgaaccaagcttcatttcaaaacctgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccttgcacag 38040078  T
Q  335 aagatgtcttcgaaaatataacttctagcttaaatgggctataaat 380  Q
    |||| || |||    |||| ||||||  ||| ||||||||||||||    
T  38040077 aagacgttttcttgcatattacttctcacttcaatgggctataaat 38040032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 236 - 341
Target Start/End: Complemental strand, 48840806 - 48840702
Alignment:
Q  236 catacttgaatcaaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacaga 335  Q
    |||||||||| ||| | || ||||||  |||||||||| |||  ||| |||| |||||||||||||||||||||||||||||||| |||| |||||||||    
T  48840806 catacttgaaccaagcctcatttcaagacttgttgagt-aagtggagaaagaatttggatatgatcatccaatgggtggcctcacaattccttgcacaga 48840708  T
Q  336 agatgt 341  Q
    ||||||    
T  48840707 agatgt 48840702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 238 - 338
Target Start/End: Complemental strand, 50904885 - 50904785
Alignment:
Q  238 tacttgaatcaaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacagaag 337  Q
    |||||||| ||| | || ||||||  ||||||||||| ||| ||||| || || |||||||||||||||||||||||||||||||||| ||||| |||||    
T  50904885 tacttgaaccaaacttcatttcaagacttgttgagtcgagcagaggatgaattcggatatgatcatccaatgggtggcctcaccattccttgcagagaag 50904786  T
Q  338 a 338  Q
    |    
T  50904785 a 50904785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 235 - 380
Target Start/End: Complemental strand, 38033875 - 38033726
Alignment:
Q  235 tcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatcc----aatgggtggcctcaccattctttgc 330  Q
    ||||||||||| ||| | || ||||||  ||||||||||||||| |||||||| ||||||||||| |||||    |||||| ||| |||| ||||  |||    
T  38033875 tcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaatttggatatgaccatccaattaatgggcggcatcacaattccctgc 38033776  T
Q  331 acagaagatgtcttcgaaaatataacttctagcttaaatgggctataaat 380  Q
    ||||||||||| |||    |||| |||||| |||| ||||||||||||||    
T  38033775 acagaagatgttttcttgcatattacttctcgcttcaatgggctataaat 38033726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 38032260 - 38032301
Alignment:
Q  169 gaagttccaaagggctatgttgcattgtatgttggagagaaa 210  Q
    ||||||||||| |||||| ||||| |||||||||||||||||    
T  38032260 gaagttccaaaaggctatcttgcagtgtatgttggagagaaa 38032301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 222 - 341
Target Start/End: Original strand, 3073600 - 3073719
Alignment:
Q  222 tgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcacc 321  Q
    ||||||||| |  ||||||||||| ||| | || ||||||| |||| ||||||  || |||||||| || ||||| |||||||||||||||||||||||     
T  3073600 tgtgatccctacgtcatacttgaaccaaacttcatttcaatacttgctgagtcgggcagaggaagaattcggatacgatcatccaatgggtggcctcaca 3073699  T
Q  322 attctttgcacagaagatgt 341  Q
    |||| |||||||||||||||    
T  3073700 attccttgcacagaagatgt 3073719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 226 - 380
Target Start/End: Complemental strand, 21607401 - 21607247
Alignment:
Q  226 atcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattc 325  Q
    ||||| || ||||||||||| | | | || ||||||  ||| ||||||||||| |||||||| |||||||||||||| |||||||||||||||||  |||    
T  21607401 atccccatgtcatacttgaaccgagcttcctttcaaaacttattgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctcacggttc 21607302  T
Q  326 tttgcacagaagatgtcttcgaaaatataacttctagcttaaatgggctataaat 380  Q
     ||||||||||||| | |||    | || |||||| |||| ||||||||||||||    
T  21607301 cttgcacagaagatattttcatggaaattacttctcgcttcaatgggctataaat 21607247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 235 - 380
Target Start/End: Complemental strand, 21604850 - 21604705
Alignment:
Q  235 tcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacag 334  Q
    ||||||||||| ||| | || ||||||  | ||||||||||||  |||||||| || |||||||| ||||||||||| |||||||| |||| ||||||||    
T  21604850 tcatacttgaaccaagcttcatttcaaaacatgttgagtcaagacgaggaagaattaggatatgaccatccaatgggcggcctcacaattccttgcacag 21604751  T
Q  335 aagatgtcttcgaaaatataacttctagcttaaatgggctataaat 380  Q
    |||| || |||    |||| ||||||  ||| ||||||||||||||    
T  21604750 aagacgttttcttgcatattacttctcacttcaatgggctataaat 21604705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 253 - 341
Target Start/End: Original strand, 21634605 - 21634693
Alignment:
Q  253 tcgtttcaatccttgttgagtcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacagaagatgt 341  Q
    |||||||||  |||| |||||||||| |||||||| |||||||||||||||| |||||| ||| |||| |||| |||||| ||||||||    
T  21634605 tcgtttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatcgaatgggcggcttcacaattccttgcaccgaagatgt 21634693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 21608235 - 21608276
Alignment:
Q  169 gaagttccaaagggctatgttgcattgtatgttggagagaaa 210  Q
    ||||||||||| |||||| ||||| |||||||||||||||||    
T  21608235 gaagttccaaaaggctatcttgcagtgtatgttggagagaaa 21608276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 178 - 210
Target Start/End: Complemental strand, 21477526 - 21477494
Alignment:
Q  178 aagggctatgttgcattgtatgttggagagaaa 210  Q
    ||||||||||||||| |||||||||||||||||    
T  21477526 aagggctatgttgcagtgtatgttggagagaaa 21477494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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