View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5770_low_6 (Length: 303)

Name: NF5770_low_6
Description: NF5770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5770_low_6
NF5770_low_6
[»] chr6 (3 HSPs)
chr6 (16-137)||(2425414-2425535)
chr6 (13-132)||(2428726-2428847)
chr6 (28-60)||(3593126-3593158)
[»] chr5 (3 HSPs)
chr5 (18-88)||(39664222-39664292)
chr5 (32-78)||(14537162-14537208)
chr5 (28-77)||(14536474-14536523)
[»] chr3 (1 HSPs)
chr3 (27-88)||(19598526-19598587)
[»] chr4 (1 HSPs)
chr4 (28-78)||(51358299-51358349)


Alignment Details
Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 2425414 - 2425535
Alignment:
Q  16 atcaaagtgtgctatcttttcaacaaaacttgttaataattaagaaaatatattaacatcaaatgcgacgatgattgacggaaagagaaagatggaagat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2425414 atcaaagtgtgctatcttttcaacaaaacttgttaataattaagaaaatatattaacatcaaatgcgacgatgattgacggaaagaggaagatggaagat 2425513  T
Q  116 atgacaccggagaaaaatggac 137  Q
    ||||||||||||||||||||||    
T  2425514 atgacaccggagaaaaatggac 2425535  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 2428726 - 2428847
Alignment:
Q  13 aatatcaaagtgtgctatcttttcaacaaaacttgttaataatt--aagaaaatatattaacatcaaatgcgacgatgattgacggaaagagaaagatgg 110  Q
    |||||||||||||||||||||||||||  |||||||||| ||||  || |||  |||||||||||||| || |||||| ||||| |||||||||||||||    
T  2428726 aatatcaaagtgtgctatcttttcaacgcaacttgttaaaaattttaaaaaataatattaacatcaaacgcaacgatggttgacagaaagagaaagatgg 2428825  T
Q  111 aagatatgacaccggagaaaaa 132  Q
    ||||||||||||| | ||||||    
T  2428826 aagatatgacacctgggaaaaa 2428847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 3593158 - 3593126
Alignment:
Q  28 tatcttttcaacaaaacttgttaataattaaga 60  Q
    |||||||||||||||||||||||| ||||||||    
T  3593158 tatcttttcaacaaaacttgttaaaaattaaga 3593126  T

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Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 39664222 - 39664292
Alignment:
Q  18 caaagtgtgctatcttttcaacaaaacttgttaataattaagaaaatatattaacatcaaatgcgacgatg 88  Q
    |||||||  ||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||| ||||    
T  39664222 caaagtgcactatcttttcaacaaaacttgttaaaaattaagagaatatattaacatcaaatacgatgatg 39664292  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 14537208 - 14537162
Alignment:
Q  32 ttttcaacaaaacttgttaataattaagaaaatatattaacatcaaa 78  Q
    ||||||||| |||||||||| |||||||| |||||||||||||||||    
T  14537208 ttttcaacataacttgttaaaaattaagacaatatattaacatcaaa 14537162  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 14536523 - 14536474
Alignment:
Q  28 tatcttttcaacaaaacttgttaataattaagaaaatatattaacatcaa 77  Q
    ||||||||| ||| ||||||||||||||||||| ||||||||| ||||||    
T  14536523 tatcttttccacataacttgttaataattaagagaatatattagcatcaa 14536474  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 19598526 - 19598587
Alignment:
Q  27 ctatcttttcaacaaaacttgttaataattaagaaaatatattaacatcaaatgcgacgatg 88  Q
    |||||||||||||| |||||||||| |||||| | ||||||| |||||| ||||||| ||||    
T  19598526 ctatcttttcaacacaacttgttaaaaattaacagaatatataaacatcgaatgcgaagatg 19598587  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 51358299 - 51358349
Alignment:
Q  28 tatcttttcaacaaaacttgttaataattaagaaaatatattaacatcaaa 78  Q
    ||||||| ||||| ||||||| || ||| ||||||||||||||||||||||    
T  51358299 tatctttgcaacacaacttgtgaaaaataaagaaaatatattaacatcaaa 51358349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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